Locus 4458

Sequence ID 3L_DroMel_CAF1
Location 12,955,306 – 12,955,418
Length 112
Max. P 0.840433
window6940

overview

Window 0

Location 12,955,306 – 12,955,418
Length 112
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 88.44
Mean single sequence MFE -23.82
Consensus MFE -18.78
Energy contribution -18.78
Covariance contribution -0.00
Combinations/Pair 1.17
Mean z-score -1.83
Structure conservation index 0.79
SVM decision value 0.75
SVM RNA-class probability 0.840433
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12955306 112 + 23771897
----UCAAUCACGAUACAAAUUAAAGGUAUGAGGUUGUGUUCUAACAUGAUUUAACAGCAAAAUAGUAAGCUAAAAUA----GUUGUGCUGUACAAAAAUAAUAACUACUCGUAUCAAAU
----.....................(((((((((((((..((......))....)))))...(((((((((((...))----))).))))))................)))))))).... ( -22.00)
>DroSec_CAF1 72493 116 + 1
----UCAAUCACGAUACAAAUUAAAGGUAUGAGGUUGUGUUCUAACAUGAUUCAACAGCAAAAUAGUAAGCUAAAAUGUUGGGCUGUGCUGUACAAAAAUAAUAACUACUCGUAUCAAAU
----.....................((((((((((..(((....)))..))...((((((...((((.(((......)))..))))))))))................)))))))).... ( -25.10)
>DroSim_CAF1 77327 116 + 1
----UCAAUCACGAUACAAAUUAAAGGUAUGAGGUUGUGUUCUAACAUGAUUCAACAGCAAAAUAGUAAGCUAAAAAGUUGUGCUGUGCUGUACAAAAAUAAUAACUACUCGUAUCAAAU
----.....................((((((((((..(((....)))..))...((((((...(((((((((....)))).)))))))))))................)))))))).... ( -25.50)
>DroEre_CAF1 78635 116 + 1
----UCAAUCAUGAUGCAAAUUGUUGGUAUGAGGUGGUGUUCUAACAUGAGUCAACAGCGAAAUUGCAAGCUAAAACAUUGUGCUGUGUUGUACAAAAAUAAUAACUACUCGUAUCCAGU
----...................((((((((((.((((..((......))((((((((((....))).(((...........))).))))).))..........)))))))))).)))). ( -21.10)
>DroYak_CAF1 76450 120 + 1
CAGUUCAAUCAUGAUGCAAAUUAAUGGUAUGAGGUUGUGUUCUAACAUGAAUCAACAACAAAAUUGCAAGCUAAAACAUUGUUUUGUGCUGUAGAAAAAUAAUAACUACUCGUAUCAAAU
..(((((....))).)).......((((((((((((((((((......))))..)))))....(((((.((((((((...)))))).)))))))..............)))))))))... ( -25.40)
>consensus
____UCAAUCACGAUACAAAUUAAAGGUAUGAGGUUGUGUUCUAACAUGAUUCAACAGCAAAAUAGUAAGCUAAAACAUUGUGCUGUGCUGUACAAAAAUAAUAACUACUCGUAUCAAAU
.........................(((((((((((((..((......))....)))))...(((((((((...........))).))))))................)))))))).... (-18.78 = -18.78 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:36 2006