Locus 4454

Sequence ID 3L_DroMel_CAF1
Location 12,953,909 – 12,954,029
Length 120
Max. P 0.988532
window6933

overview

Window 3

Location 12,953,909 – 12,954,029
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.92
Mean single sequence MFE -38.04
Consensus MFE -36.52
Energy contribution -37.24
Covariance contribution 0.72
Combinations/Pair 1.06
Mean z-score -1.58
Structure conservation index 0.96
SVM decision value 2.12
SVM RNA-class probability 0.988532
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12953909 120 - 23771897
CACAAUUGUUGCGGGAAUCUGGAAAAUCUGUAUCGCACUGCCCUGGUUUUUCUUGUGCGUGAAGAUAUUGUGCUGCCACUGCCGCAUUACGCGGGUUUUCCCCUCCCUCGAUGGUUGUGC
((((((..(((.((((....(((((((((((..(((((.((....)).......)))))..........((((.((....)).))))...)))))))))))..)))).)))..)))))). ( -43.70)
>DroSec_CAF1 71122 120 - 1
CACAAUUGUUGCGGGAAUCUGGAAAAUCUGUAUCGCACUGCCCUGGUUUUUCUUGUGCGUGAAGAUAUUUUGCUGCCACUGCCGCAUUACGCGGGCUUUCCCCUCCCUCGAUGGUUGUGC
((((((..(((.((((....(((((..((((..(((((.((....)).......)))))...........(((.((....)).)))....))))..)))))..)))).)))..)))))). ( -39.80)
>DroSim_CAF1 75953 119 - 1
CACAAUUGUUGCGGGAAUCUGGAAAAUCUGUAUCGCACUGCCCUGGUU-UUCUUGUGCGUGAAGAUAUUUUGCUGCCACUGCCGCAUUACGCGGGCUUUCCCCUCCCUCGAUGGUUGUGC
((((((..(((.((((....(((((..((((..(((((.((....)).-.....)))))...........(((.((....)).)))....))))..)))))..)))).)))..)))))). ( -40.40)
>DroEre_CAF1 77196 120 - 1
CACAAUUGUUGCGGGAAUCUGGAAAAUCUGUAUCGCACUGCCCUGGUUCUUCCUGUGCGUGAAAAUAUUCUGCUGCCACUGCCGCAUUACGCGGGUUUUCCCCUUUAUCGAUGGUUGUGC
((((((..(((.(((.....(((((((((((..(((((......((.....)).)))))...........(((.((....)).)))....))))))))))))))....)))..)))))). ( -35.50)
>DroYak_CAF1 75010 120 - 1
CACAAUUGUUGCGGGAAUCUGGAAAAUCUGUAUCGCACUGCCCUGGUUUUUCUUGUGCGUGAAAAUAUUCUGCUGCCAUUGCCGCAUUACGCUGCUUUUCCCCUUUAUCGAUGGUUGUGC
((((((..(((.(((((...((((((((.(((......)))...))))))))..((((((((........(((.((....)).))))))))).))..)))))......)))..)))))). ( -30.80)
>consensus
CACAAUUGUUGCGGGAAUCUGGAAAAUCUGUAUCGCACUGCCCUGGUUUUUCUUGUGCGUGAAGAUAUUCUGCUGCCACUGCCGCAUUACGCGGGUUUUCCCCUCCCUCGAUGGUUGUGC
((((((..(((.((((....(((((((((((..(((((.((....)).......)))))...........(((.((....)).)))....)))))))))))..)))).)))..)))))). (-36.52 = -37.24 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:29 2006