Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 12,951,858 – 12,951,978 |
Length | 120 |
Max. P | 0.938375 |
Location | 12,951,858 – 12,951,978 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.42 |
Mean single sequence MFE | -31.52 |
Consensus MFE | -28.86 |
Energy contribution | -29.26 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.05 |
Mean z-score | -1.52 |
Structure conservation index | 0.92 |
SVM decision value | 1.29 |
SVM RNA-class probability | 0.938375 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12951858 120 - 23771897 GCAUUAAGUGUGUUCUCAUUUGGUCCCGGCCCUGAGCCUUAAUUAAUAUGAAUUAAUUUUAGUGUUAAUUGGAAGUGGUUGGGAAUGGUUUACGCUCUCGAUGCAUGCGAAUAAUUCCUA ((((..((.((((..((((....((((((((((...((..(((((((((.((......)).))))))))))).)).))))))))))))...)))).))..))))................ ( -35.30) >DroSec_CAF1 69065 120 - 1 GCACUAAGUGUGUUCUCAUUUGGUCCCGUCCCUGAGCCUUAAUUAAUAUGAAUUAAUUUUAGUGUUAAUUGCAAGUGGUUGGGAAUGGUUUACGCUCUCGAUGCAUGUGAAUAAUUCCUA ..((((((((......))))))))..........((((.((((((((((.((......)).)))))))))).....))))((((((.((((((((.......))..)))))).)))))). ( -26.10) >DroSim_CAF1 73921 120 - 1 GCAUUAAGUGUGUUCUCAUUUGGUCCCGGCCCUGAGCCUUAAUUAAUAUGAAUUAAUUUUAGUGUUAAUUGCAAGUGGUUGGGAAUGGUUUACGCUCUCGAUGCAUGUGAAUAAUUCCUA ((((..((.((((..((((....((((((((((..((...(((((((((.((......)).))))))))))).)).))))))))))))...)))).))..))))................ ( -34.40) >DroEre_CAF1 75176 120 - 1 GCAUUAAGUGUGUUCUCAUUUGGUCCUGGCCCAGAGCCUUAAUUAAUAUGAAUUAAUUUUAGUGUUAAUUGCAAGUGGUUGGGAAUGGUUUACGCUCUCAAUGCAUGUGAAGAAUUCCUA (((((.((.((((..((((....(((..(((....((...(((((((((.((......)).)))))))))))....)))..)))))))...)))).)).)))))................ ( -29.30) >DroYak_CAF1 72939 120 - 1 GCAUUAAGUGUGUUCUCAUUUGGUCCCGGCCCCGAGCCUUAAUUAAUAUGAAUUAAUUUUAGUGUUAAUUGCAAGUGGUUGGGAAUGGUUUACGCUCUCAAUGCAUGUGAAGAAUUCCUG (((((.((.((((..((((....((((((((.(..((...(((((((((.((......)).)))))))))))..).))))))))))))...)))).)).)))))................ ( -32.50) >consensus GCAUUAAGUGUGUUCUCAUUUGGUCCCGGCCCUGAGCCUUAAUUAAUAUGAAUUAAUUUUAGUGUUAAUUGCAAGUGGUUGGGAAUGGUUUACGCUCUCGAUGCAUGUGAAUAAUUCCUA (((((.((.((((..((((....((((((((((......((((((((((.((......)).))))))))))..)).))))))))))))...)))).)).)))))................ (-28.86 = -29.26 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:17 2006