Locus 445

Sequence ID 3L_DroMel_CAF1
Location 1,295,922 – 1,296,042
Length 120
Max. P 0.522308
window649

overview

Window 9

Location 1,295,922 – 1,296,042
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 95.56
Mean single sequence MFE -43.60
Consensus MFE -40.22
Energy contribution -40.67
Covariance contribution 0.45
Combinations/Pair 1.03
Mean z-score -1.61
Structure conservation index 0.92
SVM decision value -0.02
SVM RNA-class probability 0.522308
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1295922 120 + 23771897
GCGACUCCAUCAUCCGCUCGACGGUGGGGAACAGCAUAUAGCACUUUUGGAUGCGACUCCGUAUCCGCUCGUUUUCCAGCAGCUGCAGGAUCAUCCACGCUCCGAUGGAGUGCCCAAUCA
((.((((((((..(((((....)))))(((.((((.............(((((((....)))))))(((.(....).))).))))..((.....))....)))))))))))))....... ( -44.00)
>DroSim_CAF1 2981 120 + 1
GCGACUCCAUCAUCCGCUCGACGGUGGGGAAGAGCAGAUAGCACUUUUGGAUGCGGCUGCGUAUCCGCUCGUUUUCCAGCAGCUGCAGGAUCAUCCACGCUCCGAUGGAGUGCCCAAUCA
((.((((((((.((((((....))))))...((((.(.((((......(((((((....)))))))(((.(....).))).))))).((.....))..)))).))))))))))....... ( -46.30)
>DroYak_CAF1 2932 120 + 1
GCGAUUCCAUCAUCCGCUCGACGGUGGGGAACAGCAUAUAGCACUUUUGGAUGCGGUUCCGUAUCCGCUCGUUUUCCAGCAGCUGCAGAAUCAUCCACGCGCCGAUGGAGUGCCCAAUCA
((.((((((((...(((..((.(((((..(((.((.....))......(((((((....)))))))....)))..)).((....))...))).))...)))..))))))))))....... ( -40.50)
>consensus
GCGACUCCAUCAUCCGCUCGACGGUGGGGAACAGCAUAUAGCACUUUUGGAUGCGGCUCCGUAUCCGCUCGUUUUCCAGCAGCUGCAGGAUCAUCCACGCUCCGAUGGAGUGCCCAAUCA
((.((((((((..(((((....)))))(((...((...((((......(((((((....)))))))(((.(....).))).))))..((.....))..)))))))))))))))....... (-40.22 = -40.67 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:59 2006