| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,949,955 – 12,950,075 |
| Length | 120 |
| Max. P | 0.661154 |
| Location | 12,949,955 – 12,950,075 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.75 |
| Mean single sequence MFE | -23.60 |
| Consensus MFE | -19.04 |
| Energy contribution | -19.44 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.661154 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12949955 120 + 23771897 UUUUAUUUUUUGACAUCGUUUUGGAAAAUAUAUGUACGUAUUUUCUGUACAUUUGGGCAUUUAACGAUGUGUAAAAGCGUUUGCGAUUUCGGUUAAUUGAAUUGUUUCUUUAUGCACUUU .......(((((((((((((..(((((((((......)))))))))(..(....)..)....)))))))).)))))((((..((((((.(((....)))))))))......))))..... ( -22.50) >DroSec_CAF1 67157 118 + 1 AAU--UUUUUUGACAUCGUUUCAGAAAAUAUAUGUACGUAUUUUCUGUACUUUUGGGCAUUUAACGAUGCGUAAAAGCGUUUGCAAUUUCGGUUAAUUGAAUUGUUUCUUUAUGCAAUUU ...--....(((((.......((((((((((......))))))))))..((((((.(((((....))))).))))))..............)))))..(((((((........))))))) ( -25.30) >DroSim_CAF1 71985 118 + 1 AUU--UUUUUUGACAUCGUUUUGGAAAAUAUAUAUACGUAUUUUCUGUACAUUUGGGCAUUUAACGAUGUGUAAAAGCGUUUGCAAUUUCGGUUAAUUGAAUUGUUUCUUUAUGCAAUUU ...--..(((((((((((((..(((((((((......)))))))))(..(....)..)....)))))))).)))))((((..((((((.(((....)))))))))......))))..... ( -22.80) >DroEre_CAF1 73209 116 + 1 --U--UUUUUUGACAUCGUUUUGGAAUAUAUAUGUACGUAUUUUGUGUGCAUUUGGCCAUUUAACUAUGUGUAAAAGCGUUUGCAAUUUCGGUUAAUUGAAUUGUUUCUUUAUGCAAUUU --.--..(((((((((.(((.(((....((.(((((((.......))))))).)).)))...))).)))).)))))((((..((((((.(((....)))))))))......))))..... ( -20.80) >DroYak_CAF1 71092 116 + 1 --U--UUUUUUGACAUCGUUUUGCAAAAUAUAUGUACGCAUUUUCUGUGCAUUUGGGCAUUUAACGAUGUGUAAAAGCGUUUGCAAUUUCGGUUAAUUGAAUUGUUCCUUUAUGCAAUUU --.--..(((((((((((((.(((....((.(((((((.......))))))).)).)))...)))))))).)))))((((..((((((.(((....)))))))))......))))..... ( -26.60) >consensus __U__UUUUUUGACAUCGUUUUGGAAAAUAUAUGUACGUAUUUUCUGUACAUUUGGGCAUUUAACGAUGUGUAAAAGCGUUUGCAAUUUCGGUUAAUUGAAUUGUUUCUUUAUGCAAUUU .......(((((((((((((........((.(((((((.......))))))).)).......)))))))).)))))((((..((((((.(((....)))))))))......))))..... (-19.04 = -19.44 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:11 2006