Locus 4445

Sequence ID 3L_DroMel_CAF1
Location 12,948,909 – 12,949,029
Length 120
Max. P 0.966743
window6909

overview

Window 9

Location 12,948,909 – 12,949,029
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.83
Mean single sequence MFE -35.88
Consensus MFE -30.26
Energy contribution -30.38
Covariance contribution 0.12
Combinations/Pair 1.10
Mean z-score -1.93
Structure conservation index 0.84
SVM decision value 1.60
SVM RNA-class probability 0.966743
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12948909 120 - 23771897
AGCGGAAAUUUACCCAAAGAAAGGAUGAAGCACACAAACGGCUAUAAGAAGGAAUCGCAGCUGUAGCUGCGCCUGCAUCAGCGUCUCAGGCCCAAAGUGGGCUAAAAUUGUAGCACGAGU
.(.(....((((.((.......)).))))...).)...((((((((((((((...((((((....)))))))))((....))...)).(((((.....)))))....))))))).))... ( -33.80)
>DroSec_CAF1 66040 120 - 1
AGCGGAAAUUUACACAAAGAAAGGAUGUAGCACAGAAACGGCUAUAAGAGGGAAUCGCAGCUGUAGCUGCGCUUGCAUCAGCGUCUCAGGCCCAAAGUGGGCUAAAAUUGUAGCACGAGU
.((...(((((......(((...((((((((.(((..((((((....((.....))..))))))..))).)).))))))....)))..(((((.....))))).)))))...))...... ( -37.70)
>DroSim_CAF1 70842 120 - 1
AGCGGAAAUUUACACAAAGAAAGGAUGUAGCACACAAACGGCUAUAAGAGGGAAUCGCAGCUGUAGCUGCGCCUGCAUCAGCGUCUCAGGCCCAAAGUGGGCUAAAAUUGUAGCACGAGU
.((....((((...........))))...)).......((((((((((((((...((((((....)))))))).((....))..))).(((((.....)))))....))))))).))... ( -34.30)
>DroEre_CAF1 72177 120 - 1
AGCGGAAAUUUACACAAAGAAAGGAUGUAGCACACGAACGGCAAUAAGAAGGAAUCGCAGCUGUAGCUGUGGCUGCAGCAGCGUCCCAGGCCCAAAGUGGGCUAAAAUUGUAGCACGAGU
.((...(((((...........((((((.((.(......))).................((((((((....)))))))).))))))..(((((.....))))).)))))...))...... ( -36.80)
>DroYak_CAF1 69943 120 - 1
AGCGGAAAUUUACACAAAGAAAGGAUGUAGCACACGAACGGCAAUAAGAAGGAAUCGCAGCUGUAGCUGCGGCUGCAGCAGCGUCUCAGGCCCAAAGUGGGCUGAAAUUGUAGUACGAGU
.((....((((...........))))...))...((.((.(((((......((..(((.((((((((....)))))))).)))..)).(((((.....)))))...))))).)).))... ( -36.80)
>consensus
AGCGGAAAUUUACACAAAGAAAGGAUGUAGCACACAAACGGCUAUAAGAAGGAAUCGCAGCUGUAGCUGCGCCUGCAUCAGCGUCUCAGGCCCAAAGUGGGCUAAAAUUGUAGCACGAGU
.((...(((((...........((((((.((.(......))).....((.(.(..((((((....))))))..).).)).))))))..(((((.....))))).)))))...))...... (-30.26 = -30.38 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:05 2006