Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 12,947,172 – 12,947,292 |
Length | 120 |
Max. P | 0.670992 |
Location | 12,947,172 – 12,947,292 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.00 |
Mean single sequence MFE | -33.14 |
Consensus MFE | -28.66 |
Energy contribution | -28.82 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.18 |
Mean z-score | -1.36 |
Structure conservation index | 0.86 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.670992 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12947172 120 - 23771897 CCUUUGAACCCUUGAUACCCUUUAUCAACGAGCUUACAAACUGAGUGGCUGCAAAGGCCAUCGAUAGGGUGGCCGAGCCCAGGCCAUCCUUGGCAUUAACCACUUCUGUGCCCGCAUUUU ((((((...((((((((.....))))))...(((((.....)))))))...))))))........(((((((((.......))))))))).(((((...........)))))........ ( -34.90) >DroSec_CAF1 64428 120 - 1 CCUUCGAACCCUUGAUACCCUUUAUCAACGAGCUUACAAACUGAGCGGCUGCAUAGGCCAUCGAUAGGGUGGCCGAUCCCAGGCCAUCCUUGGCAUUAACUACCUCUGUGCCCGCAUUUU ...((((..(.((((((.....)))))).).(((((.....)))))((((.....)))).)))).(((((((((.......))))))))).(((((...........)))))........ ( -37.80) >DroSim_CAF1 68780 120 - 1 CCUUCGAACCCUUGAUACCCUUUAUCAACGAGCUUACAAACUGAGCGGCUGCAUAGGCCAUCGAUAGGGUGGCCGAUCCCAGGCCAUCCUUUGCAUUAACUACCUCUGUGCCCGCAUUUU ...((((..(.((((((.....)))))).).(((((.....)))))((((.....)))).)))).(((((((((.......))))))))).(((....((.......))....))).... ( -34.80) >DroEre_CAF1 70494 120 - 1 CCUUCGAGCCCUUGAUUCCCCUGAUCAAUGCGUUUAUGAAAUGAGAGGCUGCAAAAGCCAUUGAUAGGGUGGCCGAUCCCAGACCAUCCUUGGCAUUAACCACCUCUGUGCCCGCGUUCU .....((((..((((((.....)))))).(((..............((((.....))))....(((((((((..(((.((((.......)))).)))..))))).))))...))))))). ( -31.70) >DroYak_CAF1 68152 120 - 1 CCUCCGAACCCUUGAUACCCUUUAUCAAUGAGUUUACAAAACGAGCUGCUGCAAAAGCCAUCGAUAGGGUGGCCGAUCCCAGUCCAUCCUUGGCAUUAACUACCUCUGUGCCCGCGUUUU .....(((((.((((((.....)))))).).))))..((((((.((....))....((((.....(((((((.(.......).)))))))))))....................)))))) ( -26.50) >consensus CCUUCGAACCCUUGAUACCCUUUAUCAACGAGCUUACAAACUGAGCGGCUGCAAAGGCCAUCGAUAGGGUGGCCGAUCCCAGGCCAUCCUUGGCAUUAACUACCUCUGUGCCCGCAUUUU ...((((..(.((((((.....)))))).).(((((.....)))))((((.....)))).)))).(((((((((.......))))))))).(((((...........)))))........ (-28.66 = -28.82 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:52 2006