| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,295,322 – 1,295,442 |
| Length | 120 |
| Max. P | 0.717818 |
| Location | 1,295,322 – 1,295,442 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.50 |
| Mean single sequence MFE | -39.83 |
| Consensus MFE | -33.23 |
| Energy contribution | -34.90 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.717818 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1295322 120 + 23771897 AACUAAUUGCCACACAAAGGCAGUGGAGUAAUUGCUAUUGGUUUGCUGUUCAACCGUAAUCCGGAUUCCCAAGUCUAUUGGCAUGGAUGGAUUAGGUAAUGGACAGGGCUGAUUGUCUGG ...((((((((...(((.((((((......)))))).))).....((((((((((.(((((((.....(((.(((....))).))).))))))))))..)))))))))).)))))..... ( -38.90) >DroSim_CAF1 2381 120 + 1 AACUAAUUGCCACACAAAGGCAGUGGAGUAAUUGCUAUUGGUUUGCUGUUCAAGCCUAAUCCGGAUUCCCAAGUCUGUUGGCAUGGGUGGAUUAGGUAGUGGACAGGGCUGAUUGUCUGG ...((((((((...(((.((((((......)))))).))).....(((((((.((((((((((....((((.(((....))).))))))))))))))..)))))))))).)))))..... ( -46.50) >DroYak_CAF1 2333 119 + 1 UACUAAUUGCCACACAAAGGCAGUGGAGUAAUUGCUAUGGGUUUGCUGUUCAACCCUAAUCCGGAUUA-CAAUUCUGUUCGUAUGGGUGGAUUAGGAACUGGACAGGGCUGAUUGUCUGG ((((.((((((.......))))))..))))...((.((.((((..(((((((..(((((((((...((-(..........)))....)))))))))...))))))))))).)).)).... ( -34.10) >consensus AACUAAUUGCCACACAAAGGCAGUGGAGUAAUUGCUAUUGGUUUGCUGUUCAACCCUAAUCCGGAUUCCCAAGUCUGUUGGCAUGGGUGGAUUAGGUAAUGGACAGGGCUGAUUGUCUGG ...((((((((...(((.((((((......)))))).))).....(((((((..(((((((((.....(((.(((....))).))).)))))))))...)))))))))).)))))..... (-33.23 = -34.90 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:58 2006