Locus 4439

Sequence ID 3L_DroMel_CAF1
Location 12,944,967 – 12,945,087
Length 120
Max. P 0.970813
window6892

overview

Window 2

Location 12,944,967 – 12,945,087
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 96.67
Mean single sequence MFE -30.77
Consensus MFE -30.94
Energy contribution -30.50
Covariance contribution -0.44
Combinations/Pair 1.06
Mean z-score -2.28
Structure conservation index 1.01
SVM decision value 1.66
SVM RNA-class probability 0.970813
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12944967 120 - 23771897
UAUUUGGCAUUUUAUCUGGAUUACAUCCUUCAGGCAGUUUUGUCUUUGUAGCCGUCUAGACAAAGCACAAAAACCAUUCUAUGGCAACCGAAUGUUUGAAUGGUUACAUUUAGUUAAAUA
((((((((......((((((........))))))..(((((((((............))))))))).....((((((((...((((......)))).)))))))).......)))))))) ( -29.20)
>DroSec_CAF1 62209 120 - 1
UAUUUGGCAUUUUAUCUGGAUUACAUCCUUCAGGCAGUUUUGUCUUUGUAGCCGUCUAGACAAAGCACAAAAACCAUUCUAUGGCAACCGGGAGCUUGAAUGGUUACAUUUAGUUAAAUA
((((((((......((((((........))))))..(((((((((............))))))))).....((((((((...(((........))).)))))))).......)))))))) ( -30.60)
>DroSim_CAF1 66555 120 - 1
UAUUUGGCAUUUUAUCUGGAUUACAUCCUUCAGGCAGUUUUGUCUUUGUAGCUGUCUAGACAAAGCACAAAAACCAUUCUAUGGCAACCGGGAGCCUGAAUGGUUACAUUUAGUUAAAUA
((((((((......((((((........))))))..(((((((((............))))))))).....((((((((...(((........))).)))))))).......)))))))) ( -32.50)
>consensus
UAUUUGGCAUUUUAUCUGGAUUACAUCCUUCAGGCAGUUUUGUCUUUGUAGCCGUCUAGACAAAGCACAAAAACCAUUCUAUGGCAACCGGGAGCUUGAAUGGUUACAUUUAGUUAAAUA
((((((((......((((((........))))))..(((((((((............))))))))).....((((((((...(((........))).)))))))).......)))))))) (-30.94 = -30.50 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:49 2006