Locus 4436

Sequence ID 3L_DroMel_CAF1
Location 12,943,788 – 12,943,907
Length 119
Max. P 0.894642
window6885

overview

Window 5

Location 12,943,788 – 12,943,907
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.40
Mean single sequence MFE -27.84
Consensus MFE -24.20
Energy contribution -24.00
Covariance contribution -0.20
Combinations/Pair 1.06
Mean z-score -1.62
Structure conservation index 0.87
SVM decision value 0.98
SVM RNA-class probability 0.894642
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12943788 119 + 23771897
ACUCACCGAUAAAAAACCAAGUUGUAGUAUUAUGAUUUUGCUACUUGG-CAACUUUUUUAAUACGCCCGUAAAGAUCAACAGCGAAAGUGGACUCGGGCCCAAAUGACUUUGGCUAAUAA
................((((((..(.((((((.((..(((((....))-)))..))..))))))(((((...((.((....((....)).)))))))))....)..)).))))....... ( -28.40)
>DroSec_CAF1 61041 119 + 1
ACUCACCGAUAAAAAACCAAGUUGUAGUAUUAUGAUUUUGCUACUUGG-CAACUUUUUUAAUACGCCCGUAAAGAUCAACAGCGAAAGUGGACUCGGGCCCAAAUGACUUUGGCUAAUAA
................((((((..(.((((((.((..(((((....))-)))..))..))))))(((((...((.((....((....)).)))))))))....)..)).))))....... ( -28.40)
>DroSim_CAF1 65387 119 + 1
ACUCACCGAUAAAAAACCAAGUUGUAGUAUUAUGAUUUUGCUACUUGG-CAACUUUUUUAAUACGCCCGUAAAGAUCAACAGCGAAAGUGGACUCGGGCCCAAAUGACUUUGGCUAAUAA
................((((((..(.((((((.((..(((((....))-)))..))..))))))(((((...((.((....((....)).)))))))))....)..)).))))....... ( -28.40)
>DroEre_CAF1 67266 120 + 1
ACUGAGCAAUAAAAAACCAAGUUGUAGUAUUAUGAUUUUGCCACUUGGCCAACUUUUUUAAUACGCCCGUAAAGAUCAACAGCGAGAGUGGACUCGGGCCCAAAUGACUUUGGCUAAUAA
................((((((..(.((((((.((.((.(((....))).)).))...))))))(((((...((.((....((....)).)))))))))....)..)).))))....... ( -26.40)
>DroYak_CAF1 64851 119 + 1
ACUCAACAGUAAAAAACCGAGUUGUAGUAUUAUGAUUUUGCCACUUGG-CAACUUUUUUAAUACGCCCGUAAAGAUCAACAGCGAAAGUGGACUCGGCCCCAAAUGACUUUGGCUAAUAA
................(((((((...((((((.((..(((((....))-)))..))..)))))).................((....)).)))))))..(((((....)))))....... ( -27.60)
>consensus
ACUCACCGAUAAAAAACCAAGUUGUAGUAUUAUGAUUUUGCUACUUGG_CAACUUUUUUAAUACGCCCGUAAAGAUCAACAGCGAAAGUGGACUCGGGCCCAAAUGACUUUGGCUAAUAA
................((((((..(.((((((.((..(((((....)).)))..))..))))))(((((...((.((....((....)).)))))))))....)..)).))))....... (-24.20 = -24.00 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:42 2006