| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,923,638 – 12,923,732 |
| Length | 94 |
| Max. P | 0.598906 |
| Location | 12,923,638 – 12,923,732 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 82.41 |
| Mean single sequence MFE | -18.41 |
| Consensus MFE | -14.24 |
| Energy contribution | -14.56 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.598906 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12923638 94 - 23771897 AUGGCGUUAAACGGAUGUGAAUCAUGUGCGGAACUCUCCCGUGCAAAAAGAAUGAGAAA--A-AAAU------UCG-------AAUGAGCCAAGGAAA--AGUAAAAACAGU .((((.(((..(((((.....(((((..(((.......)))..)).......)))....--.-..))------)))-------..)))))))......--............ ( -18.51) >DroSec_CAF1 44349 95 - 1 AUGGCGUUAAACGGAUGUGAAUCAUGUGCGGAACUCUCCCGUACAAAAAGAAUGAGAAA--AAAAAU------UCG-------AAUGAGCCAAGGAAA--AGUAAAAACAGU .((((.(((..(((((.....((((((((((.......))))))).......)))....--....))------)))-------..)))))))......--............ ( -18.73) >DroEre_CAF1 49797 93 - 1 AUGGCGUUAAACGGAUGUGAAUCAUGUGCGGAACUCCCCCGCACAAAAAGAAUGACAAA----AAGU------UCG-------AAUGAGCCAAGGAGA--AGUAAAAACAGU .((((.(..(((...(((.(.((.(((((((.......)))))))....)).).)))..----..))------)..-------)....))))......--............ ( -21.40) >DroYak_CAF1 47345 94 - 1 AUGGCGUUAAACGGAUGUGAAUCAUGUGCGGAACUCCCCAGCACAAAAAGAAUGACAAA--A-AAAU------UCG-------AAUGAGCCAAGGAAA--AGUAAAAACUGU .((((........(((....))).(((((((......)).)))))....((((......--.-..))------)).-------.....))))......--............ ( -17.00) >DroAna_CAF1 69436 110 - 1 AUGGCGUUAAACGGAUGUGAAUCAUGUGCGGAACUCCUCACCGAAAAAAAAAAAACAAAAAA-AAAUAUACACCCGAGAAAUGUGUAAGCCAGGCAAAAAAGUU-AAGCAGU .((((......(((((....)))..(((.((....)).)))))...................-.....(((((.........))))).))))............-....... ( -16.40) >consensus AUGGCGUUAAACGGAUGUGAAUCAUGUGCGGAACUCCCCCGCACAAAAAGAAUGACAAA__A_AAAU______UCG_______AAUGAGCCAAGGAAA__AGUAAAAACAGU .((((........(((....))).(((((((.......)))))))...........................................)))).................... (-14.24 = -14.56 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:22 2006