Locus 4424

Sequence ID 3L_DroMel_CAF1
Location 12,917,690 – 12,917,784
Length 94
Max. P 0.685576
window6860

overview

Window 0

Location 12,917,690 – 12,917,784
Length 94
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 90.39
Mean single sequence MFE -19.82
Consensus MFE -14.78
Energy contribution -15.02
Covariance contribution 0.24
Combinations/Pair 1.05
Mean z-score -1.82
Structure conservation index 0.75
SVM decision value 0.32
SVM RNA-class probability 0.685576
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12917690 94 - 23771897
AAAUAAUUACCUUUUUACUACCACCGAAAGAUUAACCAAUAGGGUUAAUUACUAGGACAGUCUGAAAAAAGCGGUGAUUAAUUU-------CGCAGUAUAA
...((((((((............((....((((((((.....))))))))....))...(.((......)))))))))))....-------.......... ( -18.00)
>DroSec_CAF1 38422 101 - 1
AAAUAAUUACAUUUUUACUACCACCGAAAGAUUAACCAAUAGGGUUAAUUACUAGGACAGUCUGGAAAAAGUGGUGAUUAAUUUUAAAGCUGGCAGUAUAA
..................((((((.....((((((((.....)))))))).(((((....))))).....))))))......................... ( -17.90)
>DroSim_CAF1 37467 101 - 1
AAAUAAUUACCUUUUUACUGCCACCGAAAGAUUAACCAAUAGGGUUAAUUACUAGGACAGUCUGGAAAAAGCGGUGAUUAAUUUUAAAGCUGGCAGUAUAA
...............(((((((.......((((((((.....)))))))).(((((....)))))....(((..(((......)))..))))))))))... ( -25.90)
>DroEre_CAF1 43794 100 - 1
AAAUAAUUACCUU-UUACUACCACCGAAAGAUUAACCAAUACGGUUAAUUACUAGGACAGUCUGAAAAGAGCGGUGAUUAAUUUUAAGACUCGCAGUAUAA
...((((((((..-.........((....((((((((.....))))))))....))....(((....)))..))))))))..................... ( -20.80)
>DroYak_CAF1 41264 97 - 1
UAAUAAUUACCU---UACUACGAACGAAAGAUUAACCAAUACGGUUAAUUACUAGGACAGUCUGAAAA-AGCGGUGAUUAAUUUUAAAGCUCGCAGUAUAA
...((((((((.---..(((....(....)(((((((.....)))))))...)))....(..(....)-..)))))))))..................... ( -16.50)
>consensus
AAAUAAUUACCUUUUUACUACCACCGAAAGAUUAACCAAUAGGGUUAAUUACUAGGACAGUCUGAAAAAAGCGGUGAUUAAUUUUAAAGCUCGCAGUAUAA
...((((((((............((....((((((((.....))))))))....))...(.((......)))))))))))..................... (-14.78 = -15.02 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:18 2006