Locus 4420

Sequence ID 3L_DroMel_CAF1
Location 12,910,276 – 12,910,367
Length 91
Max. P 0.791218
window6849

overview

Window 9

Location 12,910,276 – 12,910,367
Length 91
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 80.14
Mean single sequence MFE -35.68
Consensus MFE -17.19
Energy contribution -19.72
Covariance contribution 2.53
Combinations/Pair 1.12
Mean z-score -2.60
Structure conservation index 0.48
SVM decision value 0.59
SVM RNA-class probability 0.791218
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12910276 91 + 23771897
ACAACCGCAGUCAAAAUGGGUGCUGGCU--GCUGGUAGAC-GGAAACUUUCAGCCGGCACAUGGCAGGUAUGCAGCUUGCUAGCAG--------CGCCCACC
................(((((((((..(--((((((.((.-(....)..)).)))))))..((((((((.....)))))))).)))--------)))))).. ( -39.70)
>DroPse_CAF1 39957 83 + 1
GCAGCCACAGUCGAACUCGAUGUGGG---------------GGAAACU-CCAUGCAGCACAUGCCAU-AAUGC--CCUGCCAGCAGGUAUGUGGGACCCACC
((.......((((....))))(((((---------------(....))-))))))..((((((((..-..(((--.......)))))))))))......... ( -28.30)
>DroSec_CAF1 31041 91 + 1
ACAACCGCAGUCAAAAUGGGUGCAGGCU--GCUGGUAGAC-GGAAACUUUCAGCCGGCACAUGGCAGGUAUGCAGCUUGCAAGCAG--------CGCCCACC
................(((((((..(((--((((((.((.-(....)..)).)))))).....((((((.....)))))).))).)--------)))))).. ( -35.90)
>DroSim_CAF1 28855 91 + 1
ACAACCGCAGUCAAAAUGGGUGCAGGCU--GCUGGUAGAC-GGAAACUUUCAGCCGGCACAUGGCAGGUAUGCAGCUUGCUAGCAG--------CGCCCACC
................(((((((..(((--((((((.((.-(....)..)).)))))))..((((((((.....)))))))))).)--------)))))).. ( -37.20)
>DroEre_CAF1 36358 91 + 1
ACAACCGCAGUCAAAACGGGUGCAGGAU--UCUGGUAGAG-GGAAACUUUUAGCCGGCACAUGGCAGGUAUGCAGAUUGCUAGCAG--------CGCCCACC
.................((((((.....--.....(((((-(....))))))((..(((....(((....)))....)))..)).)--------)))))... ( -30.80)
>DroYak_CAF1 33546 94 + 1
ACAACCGCAGUCAAAAUGGGUGCAGGAUGUGCUGGUAAAGGGGAAACUUUCAGCCGGCACAUGGCAGGUAUGCAGCAUGCUAGCAG--------CGCCCACC
................(((((((...((((((((((..((((....))))..)))))))))).((.((((((...)))))).)).)--------)))))).. ( -42.20)
>consensus
ACAACCGCAGUCAAAAUGGGUGCAGGCU__GCUGGUAGAC_GGAAACUUUCAGCCGGCACAUGGCAGGUAUGCAGCUUGCUAGCAG________CGCCCACC
......(((.((.....)).))).((....((((((.((..(....)..)).))))))...((((((((.....))))))))...............))... (-17.19 = -19.72 +   2.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:08 2006