Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,294,162 – 1,294,402 |
Length | 240 |
Max. P | 0.962877 |
Location | 1,294,162 – 1,294,282 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.00 |
Mean single sequence MFE | -46.77 |
Consensus MFE | -46.38 |
Energy contribution | -46.17 |
Covariance contribution | -0.21 |
Combinations/Pair | 1.11 |
Mean z-score | -2.20 |
Structure conservation index | 0.99 |
SVM decision value | 1.55 |
SVM RNA-class probability | 0.962877 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1294162 120 + 23771897 CUUCCAAUAUCUGUCCGUGCACGGGGAUAAGAAUCGCUUCAACAUUGAGGUGGCUGGCAUUGAGGCAAGCACCUGCCAAGAUCUUCUCUCUCAGGCCCAGUACCAUGUGGGCCGUGCACG ...............((((((((((((.((((.((((((((....)))))))).(((((....((......)))))))...)))).)))))..((((((........))))))))))))) ( -45.50) >DroSim_CAF1 1221 120 + 1 CUUCCAAUAUCUGUCUGUGCACGGGGAUAAGAAUCGCUUCAACAUUGAGGUGGCUGGCAUUGAGGCAAGCACCUGCCAGGAUCUUCUCUCUCAGGCCCAGUACCAUGUGGGCCGUGCACG ................(((((((((((.((((.((((((((....))))))))((((((....((......))))))))..)))).)))))..((((((........)))))))))))). ( -47.70) >DroYak_CAF1 1179 120 + 1 CUUCCAAUACCUGUCCGUGCACGGGGAUAAGAAUCGCUUCAACAUCGAGGUGGCUGGUAUUGAGGCAAACACCUGCCAGGAUCUGCUCUCCCAGGCCCAGUACCAUGUGGGCCGUGCGCG ...............((((((((((((..(((.(((((((......)))))))(((((....(((......))))))))..)))..)).))).((((((........))))))))))))) ( -47.10) >consensus CUUCCAAUAUCUGUCCGUGCACGGGGAUAAGAAUCGCUUCAACAUUGAGGUGGCUGGCAUUGAGGCAAGCACCUGCCAGGAUCUUCUCUCUCAGGCCCAGUACCAUGUGGGCCGUGCACG ...............((((((((((((.((((.(((((((......)))))))(((((....(((......))))))))..)))).)))))..((((((........))))))))))))) (-46.38 = -46.17 + -0.21)
Location | 1,294,282 – 1,294,402 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.56 |
Mean single sequence MFE | -43.10 |
Consensus MFE | -40.99 |
Energy contribution | -40.77 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -1.58 |
Structure conservation index | 0.95 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.597056 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1294282 120 + 23771897 UCGCAUUGACGAGGAGGAGCGCUCGUUGCGCCGGAAGCAGGAAGAGGAGCGCGAGGCCUUCAAAAUUAAGGUGGCGGAGCAGCGCAAGCGGCGCGAGGAGGAGGCAAAGACCUCCAGGGA ((((........(((((.((((((.((...((.......))..)).))))))....))))).................((.((....)).))))))...(((((......)))))..... ( -46.30) >DroSim_CAF1 1341 120 + 1 UCGCAUUGACGAGGAGGAGCGCUCGUUGCGCCGGAAACAGGAAGAGGAGCGCGAGGCCUUUAAAAUUAAGGUGGCGGAGCAGCGCAAGCGGCGGGAGGAGGAGGCAAAGACUUCCAGGGA ((((.((((...(((((.((((((.((...(((....).))..)).))))))....)))))....))))....)))).((.((....)).)).......(((((......)))))..... ( -41.80) >DroYak_CAF1 1299 120 + 1 UCGCAUUGACGAGGAAGAGCGCUCGUUGCGCCGAAAGCAGGAGGAGGAGCGCGAGGCCUUUAAAAUUAAGGUGGCGGAGCAGCGCAAGCGGCGGGAGGAGGAGGCCAAGACCUCCAGGGA ((((..............((((((.((...((.......))..)).))))))...(((((.......))))).)))).((.((....)).)).......(((((......)))))..... ( -41.20) >consensus UCGCAUUGACGAGGAGGAGCGCUCGUUGCGCCGGAAGCAGGAAGAGGAGCGCGAGGCCUUUAAAAUUAAGGUGGCGGAGCAGCGCAAGCGGCGGGAGGAGGAGGCAAAGACCUCCAGGGA ((((..............((((((.((...((.......))..)).))))))...(((((.......))))).)))).((.((....)).)).......(((((......)))))..... (-40.99 = -40.77 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:55 2006