Locus 4419

Sequence ID 3L_DroMel_CAF1
Location 12,909,934 – 12,910,053
Length 119
Max. P 0.831332
window6848

overview

Window 8

Location 12,909,934 – 12,910,053
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 78.53
Mean single sequence MFE -14.54
Consensus MFE -2.33
Energy contribution -2.33
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.03
Structure conservation index 0.16
SVM decision value 0.72
SVM RNA-class probability 0.831332
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12909934 119 + 23771897
UUGAUUAAUGUUACAUUGCUAAUCACUCUCAUAAGGCAUACAAUCCUUACUUGCUCAACUACCUUUG-ACAAGAACUACUUUCAUACACUUCUUCCCCCUUUCAAGUAGCAUAAUUAUUU
.((((((.((((((.................(((((........)))))((((.((((......)))-)))))................................))))))))))))... ( -17.30)
>DroSec_CAF1 30699 119 + 1
UUGAUAAAUGUUACAUUGCUAAUCACUCACAUAAAGCUAGCAAUCCUUACUUGCUCAACUACCUUUG-ACAAGAACUACUUUCAUACACUUGUUCCCCCUUUCAAGUAGCAUAAUUAUUU
..(((((((((((((((((((................))))))).....((((.((((......)))-)))))................................)))))))..))))). ( -17.29)
>DroSim_CAF1 28513 119 + 1
UUGAUAAAUGUUACAUUGCUAAUCACUCUCAUAAAGCAUAAAAUCCUCACUUGCUCAACUACCUUUG-ACAAGAACUACUUUCAUACACUUGUUCCCCCUUUCAAGUAGCAUAAUUAUUU
..((((((((((((..((((..............))))...........((((.((((......)))-)))))................................)))))))..))))). ( -14.54)
>DroEre_CAF1 36029 106 + 1
UUAAUAAAUUGUACAUUUCUAAUCACUCUCAUAAGGU--------------AGCUCCUCUAUUAUUGAACAACAACUACUUUCAUAAACUGCUUUGCACUUUAAAGUAGCAUUAUUAUUU
.((((((.........................(((((--------------((......................)))))))......((((((((.....))))))))..))))))... ( -10.55)
>DroYak_CAF1 33203 120 + 1
UUACUAAGAAGUACAUUUAUAAUCAUUCUCAUAAAGCAUACAAUCCUAACUAAUGCUUUUAGUAUUGAACAACAACUACUUUCCUUUACUUCUUUCCAUUUUAAAGUAGCAUAAUUAUUU
(((((((((((((...................(((((((.............))))))).(((((((.....))).))))......))))))))..........)))))........... ( -13.02)
>consensus
UUGAUAAAUGUUACAUUGCUAAUCACUCUCAUAAAGCAUACAAUCCUUACUUGCUCAACUACCUUUG_ACAAGAACUACUUUCAUACACUUCUUCCCCCUUUCAAGUAGCAUAAUUAUUU
...........................................................................((((((......................))))))........... ( -2.33 =  -2.33 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:07 2006