| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,907,751 – 12,907,850 |
| Length | 99 |
| Max. P | 0.892271 |
| Location | 12,907,751 – 12,907,850 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.71 |
| Mean single sequence MFE | -39.88 |
| Consensus MFE | -27.28 |
| Energy contribution | -26.70 |
| Covariance contribution | -0.58 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.892271 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12907751 99 + 23771897 -----CGGCAGGCAAAGUUGU--------------GAAAGUAGGCAGCGGAAGUGCAAGUGCCGUUGCAUUGACAUUUCCGCUUC-GCAGCGCUUUUUGGCCACACUGCAUCG-GCAUGG -----..((((.....(((((--------------(((.(....).(((((((((..(((((....)))))..))))))))))))-)))))(((....)))....))))....-...... ( -36.70) >DroPse_CAF1 37774 117 + 1 GGAGGCUGAAGGCAAAGUUGGUGCAGGCAACGCACAAAAGUAGGCAGCGGAAGUGCAAGUGCCGUUGCAUUGACAUUUCCGCUUC-GCAGCGCUUUUUGGCCACAUGGCAACG-ACAA-C ...(((..(((((...((((((((.(....))))).......((.((((((((((..(((((....)))))..))))))))))))-.)))))).)))..)))...((....))-....-. ( -44.20) >DroEre_CAF1 33736 96 + 1 -----CGGCAGGCAAAGUUGU--------------GAAAGUAGGCAGCGGAAGUGCAAGUGCCGCUGCAUUGACAUUUCCGCUUC-GCAGCGCUUUUUGGCCACACUGCAUCG-UCA--- -----..((((.....(((((--------------(((.(....).(((((((((..(((((....)))))..))))))))))))-)))))(((....)))....))))....-...--- ( -36.70) >DroYak_CAF1 31180 96 + 1 -----CGGCAGGCAAAGUUGU--------------GAGAGUAGGCAGCGGAAGUGCAAGUGCCGUUGCAUUGACAUUUCCGCUUC-GCAGCGCUUUUUGGCCACACUGCAUCG-UCA--- -----..((((.....(((((--------------((........((((((((((..(((((....)))))..))))))))))))-)))))(((....)))....))))....-...--- ( -36.50) >DroAna_CAF1 55447 113 + 1 -----CGGCAGGCAAAGUUGAGCCUGGAAGCGGACGAAAGUAGGCGGCGGAAGUGCAAGUGCCGUUGCAUUGACAUUUCCGCUUC-GCAGCGCUUUUUGGCCACAUGCUAGCA-ACUUGG -----..((.((((....((.(((..((((((.((....))..((((((((((((..(((((....)))))..)))))))))..)-))..))))))..)))))..)))).)).-...... ( -47.80) >DroPer_CAF1 33304 119 + 1 GGAGGCUGAAGGCAAAGUUGGUGCAGGCCACGCACAAAAGUAUGCAGCGAAUGUGCAAGUGCCGUUGUAUUGACAUUUUCGGUUCGGCAGCGCUUUUUGGCCACAUGGCAACGGACAA-C ....((.....))...(((.((((.(((((.(((((...((.....))...)))))((((((.((((.(((((.....))))).)))).))))))..))))).....)).)).)))..-. ( -37.40) >consensus _____CGGCAGGCAAAGUUGU______________GAAAGUAGGCAGCGGAAGUGCAAGUGCCGUUGCAUUGACAUUUCCGCUUC_GCAGCGCUUUUUGGCCACACGGCAUCG_ACA___ ..........(((......................((((((..((((((((((((..(((((....)))))..))))))))))...))...))))))..))).................. (-27.28 = -26.70 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:04 2006