Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 12,907,179 – 12,907,283 |
Length | 104 |
Max. P | 0.974775 |
Location | 12,907,179 – 12,907,283 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.41 |
Mean single sequence MFE | -35.64 |
Consensus MFE | -12.42 |
Energy contribution | -13.66 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.18 |
Mean z-score | -2.25 |
Structure conservation index | 0.35 |
SVM decision value | 1.74 |
SVM RNA-class probability | 0.974775 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12907179 104 + 23771897 AAAGGAUGCGGAUGCGGAG------GCGGAGCAGGAGUG------G---UAGUGGAAGUGGAAGUCGC-AUUGCCAUUGCUGAUGGUGAUAAAAUAAAACACGCCGCACGCACCCCAUGC ...(.(((.((.((((...------((((..(((.((((------(---(((((((........)).)-))))))))).)))...(((...........))).)))).)))).))))).) ( -37.90) >DroSec_CAF1 27980 98 + 1 AAAGGAUGCGGAUGCGGAG------GCGGAGCAGGAGUG------G---UAGU------GGAAGUCGC-AUUGCCAUUGCUGAUGGUGAUAAAAUAAAACACGCCGCACGCACCCCAUGC ...(.(((.((.((((...------((((..(((.((((------(---((((------((....).)-))))))))).)))...(((...........))).)))).)))).))))).) ( -37.30) >DroSim_CAF1 25769 104 + 1 AAAGGAUGCGGAUGCGGAG------GCGGAGCAGGAGUG------G---CAGUGGAAGUGGAAGUCGC-AUUGCCAUUGCUGAUGGUGAUAAAAUAAAACACGCCGCACGCACCCCAUGC ...(.(((.((.((((...------((((..(((.((((------(---(((((((........)).)-))))))))).)))...(((...........))).)))).)))).))))).) ( -39.90) >DroYak_CAF1 30585 119 + 1 AAAGGAUGCGGAUGCGGAGGCGGAGGCGGAGCAGGAGUGGAAGUAGCAGUAGUAGCAGUAGAAGUCGC-AUUGCCAUUGCUGAUGGCGAUAAAAUAAAGCAAGCCUCACGCACCCCAUGC ...(.(((.((.(((((((((....((...((....))....((..(((((((.(((((.(....)..-))))).)))))))...))...........))..))))).)))).))))).) ( -38.30) >DroAna_CAF1 54878 85 + 1 AAAGAAAGAGGA------------------CCA-CUGUG------C---UGGU------CCAAGUCCUGGUUCCUCUUGGUGAUGGCGAUAAAAUAAAGUGCGCCUUACGCACCCU-CGG ...(((((((((------------------(((-..(..------(---(...------...))..)))).)))))))((((..((((((........)).)))).....)))).)-).. ( -24.80) >consensus AAAGGAUGCGGAUGCGGAG______GCGGAGCAGGAGUG______G___UAGU_G_AGUGGAAGUCGC_AUUGCCAUUGCUGAUGGUGAUAAAAUAAAACACGCCGCACGCACCCCAUGC ...((.((((...((((.............((....)).........................(((((.(((((....)).))).))))).............)))).)))).))..... (-12.42 = -13.66 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:03 2006