Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 12,907,034 – 12,907,154 |
Length | 120 |
Max. P | 0.984710 |
Location | 12,907,034 – 12,907,154 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -35.42 |
Consensus MFE | -33.49 |
Energy contribution | -33.72 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -1.53 |
Structure conservation index | 0.95 |
SVM decision value | 1.98 |
SVM RNA-class probability | 0.984710 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12907034 120 + 23771897 UGCCAUUUAUUUGCCGUUUGCAUUCAACGAGUCUGAUGAAUGGCCAUUUGAAGUAAGCGCAGCGCUCGCCGAGAUUACCUUAAGUAUGCGGCAAUUGCACAAGCAGCUUAAGGACAUCGU .((((((((((.((((((.......)))).))..))))))))))........(..((((...))))..)(((.....((((((((.(((.((....))....)))))))))))...))). ( -36.60) >DroSim_CAF1 25624 120 + 1 UGCCAUUUAUUUGCCGUUUGCAUUCAACGAGUCUGAUGAAUGGCCAUUUGAAGUAAGCGCAGCGCUCGCCGAGAUUACCUUAAGUAUGCGGCAAUUGCACAAGCAGCUUAAGGACAACGU .((((((((((.((((((.......)))).))..))))))))))...(((..(..((((...))))..)........((((((((.(((.((....))....))))))))))).)))... ( -35.60) >DroEre_CAF1 33035 120 + 1 UCCCAUUUAUUUGCCGUUUGCAUUCAACGAGUCUGAUGAAUGGCUAUUUGAAGUAAGCGCAGCGCUCACCGAGAUUACCUUAAGUAUGCGGCAAUUGCACAAGCAGCUUAAGGACAUCGU ..........((((.((((((.(((((..((((........))))..))))))))))))))).......(((.....((((((((.(((.((....))....)))))))))))...))). ( -33.80) >DroYak_CAF1 30440 120 + 1 UGCCAUUUAUUUGCCGUUUGCAUUCAACGAGUCUGAUGAAUGGCCAUUUAAAGUAAGCGCAGCGCUCGCCGAGAUUACCUUAAGUAUGCGGCAAUUGCACAAGCAGCUUAAGGACAUCGU .((((((((((.((((((.......)))).))..))))))))))........(..((((...))))..)(((.....((((((((.(((.((....))....)))))))))))...))). ( -36.60) >DroAna_CAF1 54718 120 + 1 UGCCAUUUAUUUGCCGUUUGCAUUCAACGAGUCUGAUGAAUGGCCAUUUGAAAUAAGCGCACUGCUCGCCGAGAUUACCUUAAGUAUGCGGCAAUUGCACAAGCAGCUUAAGGACAUCGU .((((((((((.((((((.......)))).))..))))))))))............(((.......)))(((.....((((((((.(((.((....))....)))))))))))...))). ( -33.30) >DroPer_CAF1 32296 120 + 1 UGCCAUUUAUUUGCCGUUUGCAUUCAACGAGUCUGAUGAAUGGCCAUUUGAAGUAAGCGCAGCGCUCGCCGAGAUUACCUUAAGUAUGCGGCAAUUGCACAAGCAGCUUAAGGACAUCGU .((((((((((.((((((.......)))).))..))))))))))........(..((((...))))..)(((.....((((((((.(((.((....))....)))))))))))...))). ( -36.60) >consensus UGCCAUUUAUUUGCCGUUUGCAUUCAACGAGUCUGAUGAAUGGCCAUUUGAAGUAAGCGCAGCGCUCGCCGAGAUUACCUUAAGUAUGCGGCAAUUGCACAAGCAGCUUAAGGACAUCGU .((((((((((.((((((.......)))).))..))))))))))........((.((((...)))).))(((.....((((((((.(((.((....))....)))))))))))...))). (-33.49 = -33.72 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:02 2006