| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,906,288 – 12,906,396 |
| Length | 108 |
| Max. P | 0.967686 |
| Location | 12,906,288 – 12,906,396 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 92.78 |
| Mean single sequence MFE | -34.00 |
| Consensus MFE | -29.70 |
| Energy contribution | -30.37 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.87 |
| SVM decision value | 1.61 |
| SVM RNA-class probability | 0.967686 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12906288 108 + 23771897 UUUGCUUUGCUGGCUGAAUGCCCGAAGUCUGGCCCAAGUC---GUUUUCUUGGCAGACACAUAUGCUAUACUUGCUGAAAAGUGGCAAGGUUAUUUGGCUAUCGCAACCUU ......((((((((..((((.((...(((((..(((((..---.....)))))))))).....((((..((((......)))))))).)).))))..))))..)))).... ( -33.30) >DroSec_CAF1 27092 107 + 1 UUUGCUUUGCUGGCUGAAUGCCCAAAGUCUGGC-CAAGUC---GUUUUCUUGGCAGACACAUAUGCUAUACUUGCUGAAAAGUGGCAAGGUUAUUUGGCUAUCGCAACCUU ......((((((((..((((.((...(((((.(-((((..---.....)))))))))).....((((..((((......)))))))).)).))))..))))..)))).... ( -35.70) >DroSim_CAF1 24871 108 + 1 UUUGCUUUGCUGGCUGAAUGCCCAAAGUCUGGCCCAAGUC---GUUUUCUUGGCAGACACAUAUGCUUUACUUGCUGAAAAGUGGCAAGGUUAUUUGGCUAUCGCAACCUU ......((((((((..((((.((...(((((..(((((..---.....)))))))))).....((((..((((......)))))))).)).))))..))))..)))).... ( -33.30) >DroEre_CAF1 32313 108 + 1 UUUGCUUUGCUGGCUGAAUGCCCGAAGUCUGGCCCAAGUC---GUUUUCUUGGCAGACACAUAUGCCAUACUUGCUGAAAAGUGGCAAGGUUAUUUGGCUAUCGCAACCUU ......((((((((..((((.((...(((((..(((((..---.....)))))))))).....((((..((((......)))))))).)).))))..))))..)))).... ( -35.00) >DroYak_CAF1 29682 108 + 1 UUUGCUUUGCUGGCCAAAUGCCCGAAGUCUGGCCCAAGUC---CUUUUCUUGGCACACACAUAUGCUAUACUUGCUGAAAAGUGGCAAGGUUAUUUGGCUAUCGCAACCUU ......((((((((((((((.((...((.((..(((((..---.....)))))..)).))...((((..((((......)))))))).)).))))))))))..)))).... ( -32.50) >DroAna_CAF1 53949 111 + 1 UUUGCUCUGCUGGCUUAAUGCCCGCAGUCUGGCCCGAGUCCCCGAGUUCUUGGCAGACACAUAUGCCUUUCUUGCUGAAAAGUUGCAAGGUUAUUUGGCUCCAGCAACCUU .(((((.(((.(((.....))).)))(((((..(((((..(....)..))))))))))......(((..((((((.........))))))......)))...))))).... ( -34.20) >consensus UUUGCUUUGCUGGCUGAAUGCCCGAAGUCUGGCCCAAGUC___GUUUUCUUGGCAGACACAUAUGCUAUACUUGCUGAAAAGUGGCAAGGUUAUUUGGCUAUCGCAACCUU ......((((((((((((((.((...(((((..(((((..........)))))))))).....((((..((((......)))))))).)).))))))))))..)))).... (-29.70 = -30.37 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:58 2006