| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,906,129 – 12,906,224 |
| Length | 95 |
| Max. P | 0.769280 |
| Location | 12,906,129 – 12,906,224 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 70.80 |
| Mean single sequence MFE | -21.77 |
| Consensus MFE | -11.10 |
| Energy contribution | -11.27 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.769280 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12906129 95 + 23771897 ------CAUUCUGCAGCACCCCCUGGUAAGCC--CAGCCC-------CCCCAUCGCCGGCAUUUGACGACCAAAAAUUUGGUCAACUUAAAGCCAGCUUAAAGGCAACUA ------.....(((........((((.....)--)))...-------.......((.(((.(((((.((((((....))))))...)))))))).))......))).... ( -22.40) >DroSec_CAF1 26935 93 + 1 ------CAUAGUGCAGCACCCCCUGGUAAGCC--CAGCCC---------CCAGCGCCGCCAUUUGACGACCAAAAAUUUGGUCAACUUAAAGCCAGCUUAAAGGCAACUA ------....((((........((((.....)--)))...---------...)))).(((.......((((((....))))))......(((....)))...)))..... ( -21.24) >DroSim_CAF1 24714 93 + 1 ------CAUUCUGCAGCACCCCCUGGUAAGCC--CAGCCC---------CCAGCGCCGCCAUUUGACGACCAAAAAUUUGGUCAACUUAAAGCCAGCUUAAAGGCAACUA ------......((.((.....((((.....)--)))...---------...)))).(((.......((((((....))))))......(((....)))...)))..... ( -19.90) >DroEre_CAF1 32151 98 + 1 ACGCUCCAUUCUCCAGUGCCCCCUGGCAAAGG--CAAUCCCCAUCCCC----------CCAUUUGGCGACCAACAUUUUGGUCAACUUAAAGCCCGCUUAAAGGCAACUA ..............((((((....(((...((--(.....(((.....----------.....))).((((((....))))))........))).)))....))).))). ( -22.50) >DroYak_CAF1 29516 102 + 1 ------CAUUCUCCAGCACGGCCUGGUAUACG--CCACGCCCCUCCCCCCAAACGCCCCCAUUUGGCGACCAACAUUUUGGUCAACUUAAAGCCCGCUUAAAGGCAACUA ------.........((..(((.((((....)--))).))).............(((.......)))((((((....))))))..(((.(((....))).)))))..... ( -24.90) >DroAna_CAF1 53786 99 + 1 AC-CGCCAUUUUGCG-UUCGCCAUCUUUAGUCUUUAGUCGCCAC--------ACACCG-AAAAUGGUGACCCAAAUUUUGGUCAGCUUAAAGCCCGUUUAAAGGCAACAG ..-.((((.((((.(-.(((((((.((..((.............--------..))..-)).))))))).)))))...)))).........(((........)))..... ( -19.66) >consensus ______CAUUCUGCAGCACCCCCUGGUAAGCC__CAGCCC_________CCAACGCCGCCAUUUGACGACCAAAAAUUUGGUCAACUUAAAGCCAGCUUAAAGGCAACUA ...................................................................((((((....))))))........(((........)))..... (-11.10 = -11.27 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:57 2006