Locus 4411

Sequence ID 3L_DroMel_CAF1
Location 12,905,746 – 12,905,847
Length 101
Max. P 0.848308
window6837

overview

Window 7

Location 12,905,746 – 12,905,847
Length 101
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 89.62
Mean single sequence MFE -32.13
Consensus MFE -26.45
Energy contribution -26.45
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.43
Structure conservation index 0.82
SVM decision value 0.78
SVM RNA-class probability 0.848308
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12905746 101 + 23771897
A---------------GUGGCUGCAGUUUU--CGGCUGUCGUUGC-UGUUGUACAAAGUGGAAAAUGUGGUUAAAAAC-CGCAAUACGAAAUAAAUUACUUUUUCUGCUUUGAGCUGCAG
(---------------(..((.(((((...--..))))).))..)-)((.((.(((((..(((((((((((.....))-)))).................)))))..))))).)).)).. ( -31.52)
>DroPse_CAF1 35940 115 + 1
ACGGUACG-GGUACGAGUAGCUGCAGUUUU--CGGCUGUCGUUGC-UGUUGUACAAAGUGGAAAAUGUGGUUAAAAAC-CGCAAUACGAAAUAAAUUACUUUUUCUGCUUUGAGCUGCAG
.((((.(.-.(((((((((((.(((((...--..))))).)))))-)..)))))((((..(((((((((((.....))-)))).................)))))..))))).))))... ( -33.32)
>DroEre_CAF1 31767 98 + 1
A---------------GUGGCUGCAGUUUU--CGGCUG---UUGC-UGUUGUACAAAGUGGAAAAUGUGGUUAAAAAC-CGCAAUACGAAAUAAAUUACUUUUUCUGCUUUGAGCUGCAG
.---------------....((((((((..--((((..---..))-)).....(((((..(((((((((((.....))-)))).................)))))..))))))))))))) ( -31.32)
>DroYak_CAF1 29101 101 + 1
A---------------GUGGCUGCAGUUUU--CGGCUGUCGUUGC-UGUUGUACAAAGUGGAAAAUGUGGUUAAAAAC-CGCAAUACGAAAUAAAUUACUUUUUCUGCUUUGAGCUGCAG
(---------------(..((.(((((...--..))))).))..)-)((.((.(((((..(((((((((((.....))-)))).................)))))..))))).)).)).. ( -31.52)
>DroAna_CAF1 53391 98 + 1
A------------------GCUGCAGUUUU--CGGCUGUCGUUGC-UGUUGUACAAAGUGGAAAAUGUGGUUAAAAAC-CGCAAUACGAAAUAAAUUACUUUUUCUGCUUUGAGCUGCAG
.------------------.((((((((..--((((.......))-)).....(((((..(((((((((((.....))-)))).................)))))..))))))))))))) ( -31.02)
>DroPer_CAF1 31123 120 + 1
ACGGUACGGGGUACGAGUAGCUGCAGUUUUUCCGGCUGUCGUUGCCUGUUGUACAAAGUGGAAAAUGUGGUUAAAAACCCGCAAUACGAAAUAAAUUACUUUUUCUGCUUUGAGCUGCAG
.(((((((((..((((.((((((.........))))))))))..)))))....(((((..(((((.((((((.......((.....)).....)))))).)))))..))))).))))... ( -34.10)
>consensus
A_______________GUGGCUGCAGUUUU__CGGCUGUCGUUGC_UGUUGUACAAAGUGGAAAAUGUGGUUAAAAAC_CGCAAUACGAAAUAAAUUACUUUUUCUGCUUUGAGCUGCAG
....................((((((((....((((...........))))..(((((..(((((.((((((.......((.....)).....)))))).)))))..))))))))))))) (-26.45 = -26.45 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:56 2006