Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,292,125 – 1,292,245 |
Length | 120 |
Max. P | 0.514883 |
Location | 1,292,125 – 1,292,245 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.61 |
Mean single sequence MFE | -28.26 |
Consensus MFE | -18.11 |
Energy contribution | -17.50 |
Covariance contribution | -0.61 |
Combinations/Pair | 1.32 |
Mean z-score | -2.15 |
Structure conservation index | 0.64 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.514883 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1292125 120 + 23771897 CUCUCCAAGGCGUACACCAUCGACAAUGCCAAUCCCAUGGUGCUCAAUCACCUGGCCAAUCACUUCUUCUUUAAGAAGGACUAUCAGAAAGUCCACCACCUGGCGCUGCACGCCUUCCAC ......(((((((.((.(.................((.((((......))))))((((.....(((((....)))))(((((.......)))))......))))).)).))))))).... ( -30.10) >DroVir_CAF1 803 120 + 1 CUUUCUAAGGCCUAUACCAUUGACAAUGCAAAUCCUAUGGUCUUGAAUCAUUUGGCCAAUCACUUUUUUUUCAAAAAGGACUACCAGAAGGUGCACCAUCUGGCGCUGCACGCCUUCCAC ..(((.((((((.......(((......))).......)))))))))......(((...((.((((((....))))))))...(((((.((....)).)))))........)))...... ( -24.34) >DroGri_CAF1 933 120 + 1 CUCUCUAAGGCCUACACCAUUGACAAUGCCAAUCCGAUGGUGCUCAAUCAUUUGGCCAAUCAUUUCUUCUUCAAGAAAGAUUACCAGAAGGUGCAUCAUCUCGCCCUGCACGCCUUCCAC ......(((((...((((((((............))))))))........(((((..((((.((((((....)))))))))).)))))..(((((...........)))))))))).... ( -29.80) >DroWil_CAF1 809 120 + 1 UUGUCCAAGGCCUACACCAUCGAUAAUGCCAACCCCAUGGUAUUAAAUCAUUUGGCGAAUCAUUUCUUCUUUAAAAAGGAUUAUCAGAAGGUUCAUCAUCUGGCUUUGCAUGCUUUUCAU .....(((((((....(((..((((((((((......))))))))..))...))).(((((..((((((((.....)))).....))))))))).......)))))))............ ( -24.50) >DroMoj_CAF1 907 120 + 1 CUCUCCAAGGCGUACACUAUCGACAAUGCCAAUCCGAUGGUGUUGAAUCAUUUGGCCAACCAUUUCUUUUUCAAGAAGGACUACCAAAAGGUUCAUCAUUUGGCUCUGCACGCCUUCCAC ......((((((((((((((((............)))))))))((((((.(((((....((..(((((....)))))))....))))).))))))..............))))))).... ( -33.40) >DroAna_CAF1 906 120 + 1 CUUUCCAAGGCGUACACGAUCGACAAUGCCAAUCCUAUGGUGCUCAACCAUCUGGCCAAUCACUUUUUCUUCAAGAAGGACUACCAAAAGGUCCACCAUUUGGCGCUGCACGCUUUUCAC ......(((((((.((((.........((((.....(((((.....))))).))))...((.((((((....))))))))...(((((.((....)).))))))).)).))))))).... ( -27.40) >consensus CUCUCCAAGGCCUACACCAUCGACAAUGCCAAUCCCAUGGUGCUCAAUCAUUUGGCCAAUCACUUCUUCUUCAAGAAGGACUACCAGAAGGUCCACCAUCUGGCGCUGCACGCCUUCCAC ......(((((................(((((....(((((.....))))))))))......((((((....)))))).....(((((.((....)).)))))........))))).... (-18.11 = -17.50 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:53 2006