| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,902,605 – 12,902,695 |
| Length | 90 |
| Max. P | 0.500000 |
| Location | 12,902,605 – 12,902,695 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.39 |
| Mean single sequence MFE | -15.37 |
| Consensus MFE | -8.82 |
| Energy contribution | -8.77 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.57 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12902605 90 + 23771897 AAAAAAACAUUCACACGUGCGAAAAUGUAACAA-UUUACAAAAGGAUAUGCCGAAAGGGACACUGCUACCCA----A--------ACGCACACACACUAGUGC----------------- ................(((((....(((((...-.)))))..........((....))..............----.--------.))))).(((....))).----------------- ( -16.30) >DroPse_CAF1 33039 101 + 1 AAAAAAACAUUCACACGUGCGAAAAUGUAACAA-UUUACAAAAGGAUAUGCCGAAAGGGACACA--CAC----------------UCGCACGCAGAGAAGGGAAAAUUCUGAGAGAGAGU ........((((...(((((((...(((((...-.)))))..........((....))......--...----------------)))))))(((((.........))))).....)))) ( -21.10) >DroSec_CAF1 23652 92 + 1 AAAAAAACAUUCACACGUGCGAAAAUGUAACAA-UUUACAAAAGGAUAUGCCAAAAGGGACACUGCUACGCA----C------ACACACACACACACUAGUGC----------------- ................(((((....(((((...-.)))))...((...((((.....)).))...)).))))----)------.......(((......))).----------------- ( -13.90) >DroSim_CAF1 21356 88 + 1 AAAAAAACAUUCACACGUGCGAAAAUGUAACAA-UUUACAAAAGGAUAUGCCGAAAGGGACACUGCUAA--------------ACACACACACACACUAGUGC----------------- ................(((.(....(((((...-.)))))..........((....))...........--------------.).))).(((......))).----------------- ( -11.10) >DroEre_CAF1 28733 99 + 1 AAAAAAACAUUCACACGUGCGAAAAUGUAACAAAUGUACAAAAGGAUAUGCCGAAAGGGACACUGUCACACA----UACACAGAUACACACACACACUAGUGU----------------- ................(((.(....((((.(....)))))...(..((((((....))(((...)))...))----))..).....).)))((((....))))----------------- ( -14.50) >DroYak_CAF1 25968 102 + 1 AAAAAAACAUUCACACGUGCGAAAAUGUAACAA-UUUACAAAAGGAUAUGCCGAAAGGGACACUGCCACACACUAACACACACACACACACGCAUACUAGUGC----------------- .............((((((((....(((((...-.)))))...((...(.((....)).).....)).......................)))))....))).----------------- ( -15.30) >consensus AAAAAAACAUUCACACGUGCGAAAAUGUAACAA_UUUACAAAAGGAUAUGCCGAAAGGGACACUGCCAC_CA___________ACACACACACACACUAGUGC_________________ ................(((.(....(((((.....)))))..........((....))..............................).)))........................... ( -8.82 = -8.77 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:53 2006