Locus 4404

Sequence ID 3L_DroMel_CAF1
Location 12,898,798 – 12,898,894
Length 96
Max. P 0.865075
window6827

overview

Window 7

Location 12,898,798 – 12,898,894
Length 96
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.54
Mean single sequence MFE -24.97
Consensus MFE -13.31
Energy contribution -12.82
Covariance contribution -0.50
Combinations/Pair 1.15
Mean z-score -2.24
Structure conservation index 0.53
SVM decision value 0.84
SVM RNA-class probability 0.865075
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12898798 96 - 23771897
CGGUUUCUAAUUUGC-------CAUUGCCAGCACUCAGGCAUUCAAGCAAAUUGUAAUACAAUUAGCGUCAUUAACAUGGCAUUUUGCAACGCAGCAACC-----AGC------------
.((((.((...((((-------...(((((((......))......((.(((((.....))))).))..........)))))....))))...)).))))-----...------------ ( -23.40)
>DroPse_CAF1 28238 116 - 1
CGGUUUCUAAUUUGCCAUUUGCCAUUGCUUGCAUUUACGCAUUCAAGCAAAUUGUAAUACAAUUAGCGUCAUUUACAUGGCAUUUUGCAUGCCAGCCAAC----UGCUUGCAUACACCCA
.(((.........((.(..((((((((..(((......)))..)))((.(((((.....))))).))..........)))))..).))((((.(((....----.))).))))..))).. ( -28.60)
>DroSec_CAF1 19726 97 - 1
CGGUUUCUAAUUUGC-------CAUUGCCAGCACUCAGGCAUUCAAGCAAAUUGUAAUACAAUUAGCGUCAUUAACAUGGCAUUUUGCAACGCAGCAACC----CAUC------------
.((((.((...((((-------...(((((((......))......((.(((((.....))))).))..........)))))....))))...)).))))----....------------ ( -22.50)
>DroSim_CAF1 17567 96 - 1
CGGUUUCUAAUUUGC-------CAUUGCCAGCACUCAGGCAUUCAAGCAAAUUGUAAUACAAUUAGCGUCAUUAACAUGGCAUUUUGCAACGCAGCAACU-----AGC------------
............(((-------(((((((........)))).....((.(((((.....))))).)).........))))))..((((......))))..-----...------------ ( -20.80)
>DroAna_CAF1 47260 101 - 1
CGGUUCCUAAUUUUC-------CAUUGCCUGCUCUCGGGCGUUGAAGCAAAUUGUAAUACAAUUAGCGUCAUUUACAUGGCAUUUUGCAACGCAGUCAGGACUCCCUC------------
.((.((((.......-------....(((((....)))))((((..((.(((((.....))))).))(((((....)))))......))))......))))..))...------------ ( -25.90)
>DroPer_CAF1 23273 116 - 1
CGGUUUCUAAUUUGCCAUUUGCCAUUGCUUGCAUUUACGCAUUCAAGCAAAUUGUAAUACAAUUAGCGUCAUUUACAUGGCAUUUUGCAUGCCAGCCAAC----UGCUUGCAUACACCCA
.(((.........((.(..((((((((..(((......)))..)))((.(((((.....))))).))..........)))))..).))((((.(((....----.))).))))..))).. ( -28.60)
>consensus
CGGUUUCUAAUUUGC_______CAUUGCCAGCACUCAGGCAUUCAAGCAAAUUGUAAUACAAUUAGCGUCAUUAACAUGGCAUUUUGCAACGCAGCAACC_____ACC____________
.(((......................))).((......(((.....((.(((((.....))))).))(((((....)))))....)))......))........................ (-13.31 = -12.82 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:47 2006