Locus 4403

Sequence ID 3L_DroMel_CAF1
Location 12,890,966 – 12,891,069
Length 103
Max. P 0.957543
window6826

overview

Window 6

Location 12,890,966 – 12,891,069
Length 103
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 77.65
Mean single sequence MFE -30.56
Consensus MFE -21.20
Energy contribution -21.80
Covariance contribution 0.60
Combinations/Pair 1.11
Mean z-score -2.05
Structure conservation index 0.69
SVM decision value 1.48
SVM RNA-class probability 0.957543
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12890966 103 - 23771897
CAAACGUAUCUAAGCGUCAUGGCUCACUGAAUGUGGCUGACAGGUGAGUUGUGACGAAAAAGGUACUUUCAUAU----GGCUGACUUGGG----UCAU--AUGUACCACAUUU
.....((((((...(((((..(((((((...(((.....))))))))))..)))))....))))))...(((((----((((......))----))))--))).......... ( -37.30)
>DroSec_CAF1 17258 105 - 1
CAAACGUAUCUAAGCGUCAUGGCUCACUGAAUGCGGCUGACAGGUGAGUUGUGACGAAAAAGGUACUCUCAUAU----GGCUGAGUUAGG----UGAAGGCUGUACCGUAUUU
.....((((((...(((((..(((((((..............)))))))..)))))....))))))....((((----((...((((...----....))))...)))))).. ( -32.04)
>DroSim_CAF1 15029 105 - 1
CAAACGUAUCUAAGCGUCAUGGCUCACUGAAUGCGGCUGACAGGUGAGUUGUGACGAAAAAGGUACUUUCAUAU----GGCUGAGUUAGG----UCAAGGCUGUACCAUAUUU
.....((((((...(((((..(((((((..............)))))))..)))))....))))))....((((----((...((((...----....))))...)))))).. ( -32.44)
>DroEre_CAF1 22258 110 - 1
CAAACAUAUCUAAGCGGCAUGGCUCACUGAAUGUGGCAGACAGGUGAGUUGUUAUGGAAAAGGUGCUUUAAUACCUUAGGCUGACUUAUAAAAUUUACGGGUAUA---UAUAU
.....((((((((((((((..(((((((...(((.....))))))))))..).......((((((......))))))..)))).)))...........)))))).---..... ( -24.20)
>DroYak_CAF1 19279 88 - 1
CAAACAUAUCUAAGCGGCAUGGCUCACUGCAUGCGGCUGAAAGGUGAGUUGUGAUGGAAAAGGUACUUUCAUAU----GGCUACCAUAUGAA---------------------
......(((((...(.(((..(((((((.((......))...)))))))..)).).)...)))))..(((((((----((...)))))))))--------------------- ( -26.80)
>consensus
CAAACGUAUCUAAGCGUCAUGGCUCACUGAAUGCGGCUGACAGGUGAGUUGUGACGAAAAAGGUACUUUCAUAU____GGCUGACUUAGG____UCAAGGCUGUACC_UAUUU
.....((((((...(((((..(((((((..............)))))))..)))))....))))))............................................... (-21.20 = -21.80 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:46 2006