Locus 4402

Sequence ID 3L_DroMel_CAF1
Location 12,890,528 – 12,890,635
Length 107
Max. P 0.833343
window6825

overview

Window 5

Location 12,890,528 – 12,890,635
Length 107
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 79.24
Mean single sequence MFE -23.13
Consensus MFE -14.93
Energy contribution -14.93
Covariance contribution 0.00
Combinations/Pair 1.16
Mean z-score -1.81
Structure conservation index 0.65
SVM decision value 0.72
SVM RNA-class probability 0.833343
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12890528 107 - 23771897
UUGUUAUGCUCUUUUAGGGCGCAAAUUCAAUUUGUGUCCUAACCUCACUUGCCACAGAUGUUUGUUUAUUCGAUGA---------CCCGCCCCAGCGACAUCUGCUUCGUGCUCCU
.......((.(..(((((((((((((...)))))))))))))............((((((((.(((....((....---------..))....)))))))))))....).)).... ( -26.70)
>DroPse_CAF1 25595 116 - 1
UUGCUAUGCUCUUUCAGGGCGCAAAUUCAAUUUGUGUCCUAACCUCACUUGCCACAGAUGUCUGUUUAUUCAACAAGGUACUCUCCCUAUCCCUGCCUCAACUUCUUAGAUUUUCG
.......((......(((((((((((...))))))))))).((((...(((..((((....)))).....)))..))))...............)).................... ( -19.30)
>DroEre_CAF1 21836 107 - 1
UUGUUAUGCUCUUUUAGGGCGCAAAUUUAAUUUGUGUCCUAACCUCACUUGCCACAGAUGUUUGUUUAUUCGAUGA---------CCCGCCCCAGCAACAUCUGCUUCGUGCUCCU
.......((.(..(((((((((((((...)))))))))))))............((((((((.(((....((....---------..))....)))))))))))....).)).... ( -27.00)
>DroYak_CAF1 18843 107 - 1
UUGUUAUGCUCUUUUAGGGCGCAAAUUCAAUUUGUGUCCUAACCUCACUUGCCACAGAUGUUUGUUUACUCGAUGA---------CCCGCCCCAGCAACAUCUGCUUCGUGCUCCC
.......((.(..(((((((((((((...)))))))))))))............((((((((.(((....((....---------..))....)))))))))))....).)).... ( -27.00)
>DroAna_CAF1 44431 92 - 1
UUGUUAUGCUCUUUUAGGGCGCAAAUUCAAUUUGUUUCCUAACCUCACCGGCCGCAGAUGUUUGUUUAUUCAACAA---------A-CACCCCAGUAACC--------------CA
..(((((((....((((((.((((((...)))))).))))))((.....))..))...((((((((.....)))))---------)-)).....))))).--------------.. ( -19.50)
>DroPer_CAF1 20618 116 - 1
UUGCUAUGCUCUUUCAGGGCGCAAAUUCAAUUUGUGUCCUAACCUCACUUGCCACAGAUGUCUGUUUAUUCAACAAGGUACUCUCCCUAUCCCUGCCUCAACUUCUUAGAUUUUCG
.......((......(((((((((((...))))))))))).((((...(((..((((....)))).....)))..))))...............)).................... ( -19.30)
>consensus
UUGUUAUGCUCUUUUAGGGCGCAAAUUCAAUUUGUGUCCUAACCUCACUUGCCACAGAUGUUUGUUUAUUCAACAA_________CCCACCCCAGCAACAUCUGCUUCGUGCUCCG
.......((....(((((((((((((...)))))))))))))...........((((....)))).............................)).................... (-14.93 = -14.93 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:45 2006