Locus 440

Sequence ID 3L_DroMel_CAF1
Location 1,289,509 – 1,289,629
Length 120
Max. P 0.774602
window642

overview

Window 2

Location 1,289,509 – 1,289,629
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 74.61
Mean single sequence MFE -39.64
Consensus MFE -19.02
Energy contribution -18.33
Covariance contribution -0.69
Combinations/Pair 1.36
Mean z-score -1.92
Structure conservation index 0.48
SVM decision value 0.54
SVM RNA-class probability 0.774602
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1289509 120 - 23771897
GGCAACUGGCACCAGCUGCACACUGCCAUGGCUGGAAUGCUCCAGAAGAAGCCCUCUGAAGCCAAGGCACUAUACUUCGGUGAUAACAUAAUCCAGGAUGUUUACACACCGGUGAAACAC
.(((.(((....))).))).(((((((.((((((((..(((.(....).)))..)))..))))).))))........(((((..(((((........)))))....))))))))...... ( -37.60)
>DroPse_CAF1 7552 120 - 1
GGCAACUGGCAUCAGCUGCACAAAGCACUCGCGCGGCUGCUAAACAAAGAACCCGCCCAGGCCAGGGCCCUGUACUUUGGCGACAACAUCAUCCAGGAUGUCUACACGCCCGUGAGGCAU
.(((.(((....))).))).....((.((((((.((((((((((...((..(((((....))..)))..))....)))))))...(((((......)))))......))))))))))).. ( -41.10)
>DroYak_CAF1 7010 120 - 1
GGCAAUUGGCACCAGCUGCACGCUGCCAUGGCUGGAUUGCUUCAGAAGGAGCCGUCAGAAGCCAAGGCACUGUAUUUCGGUGAUAACAUUAUCCAGGAUGUUUAUACACCGGUCAAACAU
.(((.(((....))).)))(((.((((.(((((.(((.(((((....))))).)))...))))).)))).)))...((((((((((((((......)))).)))).))))))........ ( -44.00)
>DroMoj_CAF1 6656 120 - 1
GGCAAUUGGCACCAGUUGCACCAAUCGAUGGCCAAACUCCUGCACAAAGACGCAAGUAAAGCAAGGGCUCUAUAUUUCGGAGACAAUAUCAUACAGGAUAUCUAUACGCCGGUCAAGCAU
.(((((((....))))))).........(((((.......(((......((....))...)))..(((..........(....).(((((......)))))......))))))))..... ( -30.00)
>DroAna_CAF1 7049 120 - 1
GGCAACUGGCAUGGGUUGCAUGCGGCCAUGGCUAGUAUGCUGAAUAAGGAACCAUGCGAGGCCAAGGCGCUCUACUUUGGAGACAACAUCGUUCAGGAUGUCUAUACGCCUGUCAAACAU
(((..((.((((((...(((((((((....))).))))))...........)))))).))))).(((((((((.....))))...(((((......))))).....)))))......... ( -41.84)
>DroPer_CAF1 7609 120 - 1
GGCAACUGGCAUCAGCUGCACAAAGCACUCGCGCGGCUGCUAAACAAAGAACCCGCCCAGGCCAGGGCUCUGUACUUUGGCGACAACAUCAUCCAGGAUGUCUACACGCCCGUGAGGCAU
.(((.(((....))).))).....((.((((((.((((((((((...(((.(((((....))..))).)))....)))))))...(((((......)))))......))))))))))).. ( -43.30)
>consensus
GGCAACUGGCACCAGCUGCACAAAGCCAUGGCUAGACUGCUAAACAAAGAACCCUCCGAAGCCAAGGCACUGUACUUCGGAGACAACAUCAUCCAGGAUGUCUACACGCCGGUCAAACAU
.(((.(((....))).))).........(((((...........................((....))..........((((...(((((......))))).....)))))))))..... (-19.02 = -18.33 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:52 2006