Locus 44

Sequence ID 3L_DroMel_CAF1
Location 173,479 – 173,599
Length 120
Max. P 0.895261
window55

overview

Window 5

Location 173,479 – 173,599
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 96.67
Mean single sequence MFE -39.90
Consensus MFE -38.19
Energy contribution -37.53
Covariance contribution -0.66
Combinations/Pair 1.09
Mean z-score -2.11
Structure conservation index 0.96
SVM decision value 0.99
SVM RNA-class probability 0.895261
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 173479 120 - 23771897
UGUAGUCAGUGCGUCAUCAGCCGUUAGCGGCAACUCUCGUCGCAUGCGAAAGAAGGAACUUCUUAGUCUUUAUGUGGUACAGAAAGAUAAUCACAAUGACGAUAGCUCAUGCGGACUGCC
.((((((.(((.(..(((.((((....)))).......((((..((.((((((((...)))))).((((((.((.....)).))))))..)).)).)))))))..).)))...)))))). ( -36.20)
>DroSec_CAF1 7185 120 - 1
UGUAGUCAGUGCGUCAUCAGCCGUUAGCGGCAACUCUCGCCGCAUGCGAAAGAAGGAACUUCUUAGUCUUUAUGUGGUACAGAAAGAUAACCACAAUGACGAUAGCUCAUGCGGACUGCC
.((((((...(((......((((....))))......)))((((((.(.((((((...)))))).(((....((((((...........))))))..))).....).)))))))))))). ( -40.30)
>DroYak_CAF1 7394 120 - 1
GGUAGUUAGUGCGUCAUCAGCCGUUAGCGGCAACUCGCGCCGCAUGCGAAAGAAGGAACUUCUUAGUCUUUAUGUGGUACAGAAAGAUAACCACAACGACGAUAGCUCAUGCGGACUGCC
(((((((.(((((......((((....))))....)))))((((((.(.((((((...)))))).(((....((((((...........))))))..))).....).))))))))))))) ( -43.20)
>consensus
UGUAGUCAGUGCGUCAUCAGCCGUUAGCGGCAACUCUCGCCGCAUGCGAAAGAAGGAACUUCUUAGUCUUUAUGUGGUACAGAAAGAUAACCACAAUGACGAUAGCUCAUGCGGACUGCC
.((((((...(((......((((....))))......)))((((((.(.((((((...)))))).(((....((((((...........))))))..))).....).)))))))))))). (-38.19 = -37.53 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:44 2006