Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 12,864,611 – 12,864,808 |
Length | 197 |
Max. P | 0.829413 |
Location | 12,864,611 – 12,864,728 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.29 |
Mean single sequence MFE | -34.35 |
Consensus MFE | -21.32 |
Energy contribution | -22.07 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.20 |
Mean z-score | -1.92 |
Structure conservation index | 0.62 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.695456 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12864611 117 + 23771897 CUGAGCGAUUUCAGUAACUCCGA-UACAUUUGCCACCCAUGCAGGCCAACGGCAGGCUAAUG--UUUUGGUUAUUGUUCAAGAUGGUUCCCAGCAACCUCAACAGCCAAAUCCUUGGCUA .((((((((..........((((-.(((((.(((...(.....)(((...))).))).))))--).))))..)))))))).((.((((......))))))...((((((....)))))). ( -31.60) >DroSec_CAF1 103051 120 + 1 CUUAACCAUUUCACUAACCCCCUUUCCUUUUGCCACCCCAGUCUGGCUUCGCCCCGCCAUGGGUUUUGGGUUUUUGUUCAAGAUGGUUCCCAGCAAUCUCAGCAGCCAAAUCCUUGGCUG ...((((((((((..(((((...........((((........))))...((((......))))...)))))..))....))))))))..............(((((((....))))))) ( -31.60) >DroEre_CAF1 108421 117 + 1 CUGACCGGUUUCGCUAACACCGA-UAUAUUGGCCACGCAUGCAGGGCAACGGCAGGCCAAUG--UUCUGGUUAUUGUACAAGAUGGUUCCCAACAAUCUCAACAGCCAAAUCCCUGGCUG ..(((((.....((....((((.-.(((((((((.....(((..(....).)))))))))))--)..))))....))......)))))..............((((((......)))))) ( -34.50) >DroYak_CAF1 114416 117 + 1 CUGACCGAUUUCAGUAACUCCGA-UGCAUUGGCCACGCAUGCAGGGCAACGGCAGGCCAAUG--UUCUGGUUAUUGUUCAAGAUGGUUCCCAACAACCUCAACAGCCAAAUCCCUGGCUG ......((...((((((((..((-.(((((((((.....(((..(....).)))))))))))--))).)))))))).))..((.((((......))))))..((((((......)))))) ( -39.70) >consensus CUGACCGAUUUCACUAACUCCGA_UACAUUGGCCACCCAUGCAGGGCAACGGCAGGCCAAUG__UUCUGGUUAUUGUUCAAGAUGGUUCCCAACAACCUCAACAGCCAAAUCCCUGGCUG ...........((((((((.......((((((((.....((.....))......))))))))......)))))))).....((.((((......))))))..((((((......)))))) (-21.32 = -22.07 + 0.75)
Location | 12,864,650 – 12,864,768 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.25 |
Mean single sequence MFE | -36.70 |
Consensus MFE | -25.92 |
Energy contribution | -26.68 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.17 |
Mean z-score | -1.70 |
Structure conservation index | 0.71 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.647079 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12864650 118 + 23771897 GCAGGCCAACGGCAGGCUAAUG--UUUUGGUUAUUGUUCAAGAUGGUUCCCAGCAACCUCAACAGCCAAAUCCUUGGCUAAAUCGAGGACAAAGUCCUCCCUGUACCAUCAGUCCGCUCU ((.((((((.((((......))--)))))))).........((((((...(((..........((((((....)))))).....((((((...)))))).))).)))))).....))... ( -35.00) >DroSec_CAF1 103091 120 + 1 GUCUGGCUUCGCCCCGCCAUGGGUUUUGGGUUUUUGUUCAAGAUGGUUCCCAGCAAUCUCAGCAGCCAAAUCCUUGGCUGAAUCGAGGGCAAAGUCCCCCCUGUACCGUCAGUCCCCUCU (.(((((...((((......))))...(((.((((((((.((((.((.....)).))))...(((((((....)))))))......)))))))).))).........))))).)...... ( -35.60) >DroEre_CAF1 108460 118 + 1 GCAGGGCAACGGCAGGCCAAUG--UUCUGGUUAUUGUACAAGAUGGUUCCCAACAAUCUCAACAGCCAAAUCCCUGGCUGAAUCGAGGACAAAGUCCUCCCUGUACCGUCAGUCCCCUCU ...((((.((((((((....((--(..(((..((..(.....)..))..)))))).......((((((......))))))....((((((...))))))))))..))))..))))..... ( -36.60) >DroYak_CAF1 114455 118 + 1 GCAGGGCAACGGCAGGCCAAUG--UUCUGGUUAUUGUUCAAGAUGGUUCCCAACAACCUCAACAGCCAAAUCCCUGGCUGAAUCGAGGACAAAGUUCUCCCUGUACCGUCAGUGCCCUCU ..(((((((((((((((((...--...)))...((((((..(((((((......))))....((((((......)))))).)))..)))))).......))))..))))...)))))).. ( -39.60) >consensus GCAGGGCAACGGCAGGCCAAUG__UUCUGGUUAUUGUUCAAGAUGGUUCCCAACAACCUCAACAGCCAAAUCCCUGGCUGAAUCGAGGACAAAGUCCUCCCUGUACCGUCAGUCCCCUCU ...((((.......(((((........))))).........((((((.....(((.......((((((......))))))....((((((...))))))..))))))))).))))..... (-25.92 = -26.68 + 0.75)
Location | 12,864,688 – 12,864,808 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.39 |
Mean single sequence MFE | -28.85 |
Consensus MFE | -24.14 |
Energy contribution | -24.70 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.16 |
Mean z-score | -1.84 |
Structure conservation index | 0.84 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.829413 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12864688 120 + 23771897 AGAUGGUUCCCAGCAACCUCAACAGCCAAAUCCUUGGCUAAAUCGAGGACAAAGUCCUCCCUGUACCAUCAGUCCGCUCUACCCAUAUUCCUGUACUUAUCCCCGUUAUCCGAAUUCGGG .((((((...(((..........((((((....)))))).....((((((...)))))).))).))))))...........(((..((((....((........)).....))))..))) ( -30.70) >DroSec_CAF1 103131 120 + 1 AGAUGGUUCCCAGCAAUCUCAGCAGCCAAAUCCUUGGCUGAAUCGAGGGCAAAGUCCCCCCUGUACCGUCAGUCCCCUCUACCCAUAUUCCUGCACUUAUCCUGGUUAUCCGAAUUCGGG .((((((...(((...((....(((((((....)))))))....))(((......)))..))).))))))...........(((..((((....(((......))).....))))..))) ( -29.60) >DroEre_CAF1 108498 120 + 1 AGAUGGUUCCCAACAAUCUCAACAGCCAAAUCCCUGGCUGAAUCGAGGACAAAGUCCUCCCUGUACCGUCAGUCCCCUCUACCCAUAUUCCUGCACCUAUCCUGGUUUCCCGAAUUCUGG .((((((...((..........((((((......))))))....((((((...))))))..)).))))))............(((.((((....(((......))).....))))..))) ( -30.70) >DroYak_CAF1 114493 120 + 1 AGAUGGUUCCCAACAACCUCAACAGCCAAAUCCCUGGCUGAAUCGAGGACAAAGUUCUCCCUGUACCGUCAGUGCCCUCUACCCAUAUUCCUGCAAUUAUCCUGGUUAUCCGAAUUCCGG .((((((...((..........((((((......))))))....((((((...))))))..)).))))))...............................((((...........)))) ( -24.40) >consensus AGAUGGUUCCCAACAACCUCAACAGCCAAAUCCCUGGCUGAAUCGAGGACAAAGUCCUCCCUGUACCGUCAGUCCCCUCUACCCAUAUUCCUGCACUUAUCCUGGUUAUCCGAAUUCGGG .((((((.....(((.......((((((......))))))....((((((...))))))..)))))))))...........(((..((((....(((......))).....))))..))) (-24.14 = -24.70 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:27 2006