Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 12,864,446 – 12,864,540 |
Length | 94 |
Max. P | 0.791427 |
Location | 12,864,446 – 12,864,540 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 90.51 |
Mean single sequence MFE | -16.07 |
Consensus MFE | -14.52 |
Energy contribution | -14.90 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.10 |
Mean z-score | -1.58 |
Structure conservation index | 0.90 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.791427 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12864446 94 + 23771897 UCACACUGAAAUCUGGUCCUUUUCAACUGAUCCGUUUCAGAUCAGCUGGCCAGCGAUUUCAUCAU-CGACACUACACAGA-CCACUGCCAACACCC .....(((....((((.((.......((((((.......))))))..))))))((((......))-))........))).-............... ( -16.60) >DroSec_CAF1 102879 96 + 1 UCACACUGAAAUCUGGCCCUUUUUAACUGAUCCGUUUCAGAUCAGCUGACCAGCGAAUUCACCAUCCGACACUACACAGUUCCACUGCCAUCACAU .............((((.......(((((...((((((((.....))))..))))...((.......)).......))))).....))))...... ( -12.50) >DroEre_CAF1 108257 93 + 1 UCACACUGAAAUCUGGCUCUUU-UAACUGAUCCGUUUCAGAUCAGACGGCCAGCGAUUUCACCAU-CGACACUACACAGA-CCACUGCCAACACCC .....(((....((((((.(((-...((((......))))...))).))))))((((......))-))........))).-............... ( -18.00) >DroYak_CAF1 114249 93 + 1 UCACACUGAAAUCCGGCUCUUU-UAACUGAUCCGUUUCAGAUCAGAUGGCCAGCGAUUUCACCAU-CGACACCACACAGA-CCACUGCCAACACCC ......((((((((((((.(((-...((((......))))...))).)))).).)))))))....-..........(((.-...)))......... ( -17.20) >consensus UCACACUGAAAUCUGGCCCUUU_UAACUGAUCCGUUUCAGAUCAGAUGGCCAGCGAUUUCACCAU_CGACACUACACAGA_CCACUGCCAACACCC ......((((((((((((........((((((.......))))))..)))))..)))))))...............(((.....)))......... (-14.52 = -14.90 + 0.38)
Location | 12,864,446 – 12,864,540 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 90.51 |
Mean single sequence MFE | -28.77 |
Consensus MFE | -22.26 |
Energy contribution | -23.08 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.13 |
Mean z-score | -1.85 |
Structure conservation index | 0.77 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.736640 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12864446 94 - 23771897 GGGUGUUGGCAGUGG-UCUGUGUAGUGUCG-AUGAUGAAAUCGCUGGCCAGCUGAUCUGAAACGGAUCAGUUGAAAAGGACCAGAUUUCAGUGUGA ..(..((((.(.(((-(((..((...(.((-((......)))))..))(((((((((((...)))))))))))....))))))..).))))..).. ( -29.00) >DroSec_CAF1 102879 96 - 1 AUGUGAUGGCAGUGGAACUGUGUAGUGUCGGAUGGUGAAUUCGCUGGUCAGCUGAUCUGAAACGGAUCAGUUAAAAAGGGCCAGAUUUCAGUGUGA ........(((.(((((...........(((((.....)))))((((((((((((((((...))))))))))......)))))).))))).))).. ( -28.60) >DroEre_CAF1 108257 93 - 1 GGGUGUUGGCAGUGG-UCUGUGUAGUGUCG-AUGGUGAAAUCGCUGGCCGUCUGAUCUGAAACGGAUCAGUUA-AAAGAGCCAGAUUUCAGUGUGA .((..(((((((...-.)))).)))..)).-(((.(((((((..(((((..((((((((...))))))))...-...).))))))))))).))).. ( -28.50) >DroYak_CAF1 114249 93 - 1 GGGUGUUGGCAGUGG-UCUGUGUGGUGUCG-AUGGUGAAAUCGCUGGCCAUCUGAUCUGAAACGGAUCAGUUA-AAAGAGCCGGAUUUCAGUGUGA (((..(((((.((((-((...(((((.(((-....))).))))).))))))((((((((...))))))))...-.....)))))..)))....... ( -29.00) >consensus GGGUGUUGGCAGUGG_UCUGUGUAGUGUCG_AUGGUGAAAUCGCUGGCCAGCUGAUCUGAAACGGAUCAGUUA_AAAGAGCCAGAUUUCAGUGUGA .......((((.((........)).))))..(((.(((((((..(((((((((((((((...))))))))))......)))))))))))).))).. (-22.26 = -23.08 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:24 2006