Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,279,305 – 1,279,403 |
Length | 98 |
Max. P | 0.898295 |
Location | 1,279,305 – 1,279,403 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 80.53 |
Mean single sequence MFE | -27.84 |
Consensus MFE | -18.10 |
Energy contribution | -18.62 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.10 |
Mean z-score | -1.76 |
Structure conservation index | 0.65 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.668556 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1279305 98 + 23771897 ---AAAUUAUA--------------U-UCAAAAGAGGGAAAUCCCCCUUGUACGAAGCGAACUAGUUCCAUUCGAUGGGCGGCUACUUAAAGCCGGCGAACCAGCUCAUCUCUAAC ---........--------------.-......(((((......)))))....(((..(((....)))..)))(((((((((((......))))((....)).)))))))...... ( -27.20) >DroSec_CAF1 34061 98 + 1 ---AAAUUUUA--------------U-UCAAAAGAGGGAAAUCCCCUUUGUACGAUGCGAACUAGUUCCAUUCGAUGGGCGGCUACUCAAAGCCGGCGAACCAACUCAUCUCUAAC ---........--------------.-.....((((((.....))))))....((((.(((....))))))).((((((.((((......))))((....))..))))))...... ( -23.80) >DroSim_CAF1 34496 98 + 1 ---AAAUUGUA--------------U-UCAAAAGAGGGAAAUCCCCUUUGUACGAUGCGAACUAGUUCCAUUCGAUGGGCGGCUACUCAAAGCCGGCGAACCAGCUCAUCUCUAAC ---...(((((--------------(-(....((((((.....))))))....))))))).............(((((((((((......))))((....)).)))))))...... ( -31.20) >DroEre_CAF1 33950 112 + 1 ---CAAUUUUAUAAUAAAUUCCCCUUAUCAAACAAGGGAAAUCCCCAUUGUACGAAGUGAACUGGUUCCAUUCGAUGGGCGGGUGCU-AAGGCCGGCGAACUAGCUCAUCCCUAAC ---.................(((((((((..(((((((.....))).))))..(((..(((....)))..))))))))).)))....-.(((..(((......)))....)))... ( -25.00) >DroYak_CAF1 34903 115 + 1 AAGCGAUUUUAUAAUAAAUUCCCCUU-UCAAAAAAGGGAAAUCCCCAGUGUAGAAAGCGAACUGGUUCCAGUCGAUGGGCGGGUACUCAAUGCCGGCGAACCAGCUCAUCCCACAC ..((..(((((((....(((.(((((-(....)))))).)))......))))))).))((.(((((((((.....)).((.((((.....)))).))))))))).))......... ( -32.00) >consensus ___AAAUUUUA______________U_UCAAAAGAGGGAAAUCCCCAUUGUACGAAGCGAACUAGUUCCAUUCGAUGGGCGGCUACUCAAAGCCGGCGAACCAGCUCAUCUCUAAC ...................................(((....)))...........(.(((....))))....(((((((((((......))))((....)).)))))))...... (-18.10 = -18.62 + 0.52)
Location | 1,279,305 – 1,279,403 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 80.53 |
Mean single sequence MFE | -33.28 |
Consensus MFE | -24.62 |
Energy contribution | -24.98 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.19 |
Mean z-score | -1.96 |
Structure conservation index | 0.74 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.898295 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1279305 98 - 23771897 GUUAGAGAUGAGCUGGUUCGCCGGCUUUAAGUAGCCGCCCAUCGAAUGGAACUAGUUCGCUUCGUACAAGGGGGAUUUCCCUCUUUUGA-A--------------UAUAAUUU--- ....(((.(((((((((((..(((((......)))))..(((...)))))))))))))).)))....(((((((....)))))))....-.--------------........--- ( -33.40) >DroSec_CAF1 34061 98 - 1 GUUAGAGAUGAGUUGGUUCGCCGGCUUUGAGUAGCCGCCCAUCGAAUGGAACUAGUUCGCAUCGUACAAAGGGGAUUUCCCUCUUUUGA-A--------------UAAAAUUU--- ....((..(((..((((((..(((((......)))))..(((...)))))))))..)))..))...((((((((......)))))))).-.--------------........--- ( -26.40) >DroSim_CAF1 34496 98 - 1 GUUAGAGAUGAGCUGGUUCGCCGGCUUUGAGUAGCCGCCCAUCGAAUGGAACUAGUUCGCAUCGUACAAAGGGGAUUUCCCUCUUUUGA-A--------------UACAAUUU--- ....((..(((((((((((..(((((......)))))..(((...))))))))))))))..))(((((((((((......)))))))).-.--------------))).....--- ( -32.10) >DroEre_CAF1 33950 112 - 1 GUUAGGGAUGAGCUAGUUCGCCGGCCUU-AGCACCCGCCCAUCGAAUGGAACCAGUUCACUUCGUACAAUGGGGAUUUCCCUUGUUUGAUAAGGGGAAUUUAUUAUAAAAUUG--- (((((((.((.((......)))).))))-))).((((.....((((..(((....)))..)))).....))))((((((((((((...)))))))))))).............--- ( -33.70) >DroYak_CAF1 34903 115 - 1 GUGUGGGAUGAGCUGGUUCGCCGGCAUUGAGUACCCGCCCAUCGACUGGAACCAGUUCGCUUUCUACACUGGGGAUUUCCCUUUUUUGA-AAGGGGAAUUUAUUAUAAAAUCGCUU (((((((((((((((((...(((((..((.((....)).))..).)))).)))))))))..))))))))...((((((((((((....)-)))))))))))............... ( -40.80) >consensus GUUAGAGAUGAGCUGGUUCGCCGGCUUUGAGUAGCCGCCCAUCGAAUGGAACUAGUUCGCUUCGUACAAAGGGGAUUUCCCUCUUUUGA_A______________UAAAAUUU___ ....((..(((((((((((..(((((......)))))..((.....)))))))))))))..))...(((.((((....))))...)))............................ (-24.62 = -24.98 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:51 2006