Locus 4387

Sequence ID 3L_DroMel_CAF1
Location 12,860,315 – 12,860,429
Length 114
Max. P 0.756135
window6798

overview

Window 8

Location 12,860,315 – 12,860,429
Length 114
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.76
Mean single sequence MFE -20.24
Consensus MFE -15.78
Energy contribution -16.78
Covariance contribution 1.00
Combinations/Pair 1.08
Mean z-score -1.71
Structure conservation index 0.78
SVM decision value 0.49
SVM RNA-class probability 0.756135
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12860315 114 + 23771897
UCCACAACUACUGAAGAGCCGAGCUCAACUACAAGCACCGAAAUUCCAUCAACCACUGAUAC------UACACCUAGUUCCACUAGCGUUUCUUCUACCACCGAAGAGCCAAGCUCAUCU
............((.((((...((((.............(((((...((((.....))))..------.....((((.....)))).)))))(((.......)))))))...)))).)). ( -18.70)
>DroSec_CAF1 98783 114 + 1
UCCACAACUACUGAAGAGCCGAGCUCAACUACGAGCACCGAAAUCCCAUCAACCACUGAUCC------UACACCUAGUUCCACUAGCGUUUCUUCUACCACCGAAGAGCCAAGCUCAUCU
............((((((.((.((((......))))..........................------.....((((.....)))))).)))))).......((.((((...)))).)). ( -21.00)
>DroSim_CAF1 100177 114 + 1
UCCACAACUACUGAAGAGCCGAGCACAAGUACGAGCACCGAAGUCCCAUCAACCACUGAUCC------UACACCUAGUUCCACUAGCGUUUCUUCUACCACCGAAGAGCCAAGCUCAUCU
............(((((((((.((....)).)).))......((...((((.....))))..------.))((((((.....)))).)).))))).......((.((((...)))).)). ( -18.60)
>DroEre_CAF1 104034 120 + 1
UCCACAACUACUGAAGGACCGAGCUCAACUACUAGCACCGCACUCCCAUCAACCACUGAUCCUGUUACUACUCCUAGUUCCACUAGCGUUCCUUCUACCACCGAAGAGCCAAGCUCAUCU
............((((((....(((........)))..(((......((((.....))))..((..((((....))))..))...))).)))))).......((.((((...)))).)). ( -21.50)
>DroYak_CAF1 110198 120 + 1
UCCACAACUACUGAAGAGGCAAGCUCAACUACGAGCACCGAUGUGCCAUCAACCACUGAUCCUGUAACAACACCCAGUUCCACUACCGUUCCUUCUACCACUGAAGAGCCAAGCUCAUCU
............((((..((..((((......))))...((((...))))....((((....(((....)))..)))).........))..)))).......((.((((...)))).)). ( -21.40)
>consensus
UCCACAACUACUGAAGAGCCGAGCUCAACUACGAGCACCGAAAUCCCAUCAACCACUGAUCC______UACACCUAGUUCCACUAGCGUUUCUUCUACCACCGAAGAGCCAAGCUCAUCU
............((((((.((.((((......))))...........((((.....)))).............((((.....)))))).)))))).......((.((((...)))).)). (-15.78 = -16.78 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:19 2006