Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 12,857,924 – 12,858,014 |
Length | 90 |
Max. P | 0.886784 |
Location | 12,857,924 – 12,858,014 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 99.56 |
Mean single sequence MFE | -16.80 |
Consensus MFE | -16.80 |
Energy contribution | -16.80 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.48 |
Structure conservation index | 1.00 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.886784 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12857924 90 - 23771897 CGGAAACGAACAAAAAGCUGCAUGUAAAACAAAUCAUUAGGUAAUUGAAUUUGGUUAGGAAAAAUACAAUUUAUUCGCAUUCGCAGCUGA ((....)).......((((((((((....(((((((.........)).))))).....(((.((......)).)))))))..)))))).. ( -17.30) >DroSec_CAF1 96373 90 - 1 CGGAAACGAACAAAAAGCUGCAUGUAAAACAAAUCAUUAGGUAAUUGAAUUUGGUUAGGAAAAAUACAAUUUAUUCGCAUUCGCAGCUGA ((....)).......((((((((((....(((((((.........)).))))).....(((.((......)).)))))))..)))))).. ( -17.30) >DroSim_CAF1 97764 90 - 1 CGGAAACGAACAAAAAGCUGCAUGUAAAACAAAUCAUUAGGUAAUUGAAUUUGGUUAGGAAAAAUACAAUUUAUUCGCAUUCGCAGCUGA ((....)).......((((((((((....(((((((.........)).))))).....(((.((......)).)))))))..)))))).. ( -17.30) >DroEre_CAF1 101626 90 - 1 CGGAAACGAACAAAAAGCUGCAUGUAAAACAAAUCAUUAGGUAAUUGAAUUUGGUUAGGAAAAAUACAAUUUAUUCGCAUUCGCAGCUGA ((....)).......((((((((((....(((((((.........)).))))).....(((.((......)).)))))))..)))))).. ( -17.30) >DroYak_CAF1 107744 90 - 1 CGGAAGCGAACAAAAAGCUGCAUGUAAAACAAAUCAUUAGGUAAUUGAAUUUGGUUAGGAAAAAUACAAUUUAUUCGCAUUCGCAGCUGA ((....)).......((((((((((....(((((((.........)).))))).....(((.((......)).)))))))..)))))).. ( -14.80) >consensus CGGAAACGAACAAAAAGCUGCAUGUAAAACAAAUCAUUAGGUAAUUGAAUUUGGUUAGGAAAAAUACAAUUUAUUCGCAUUCGCAGCUGA ((....)).......((((((((((....(((((((.........)).))))).....(((.((......)).)))))))..)))))).. (-16.80 = -16.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:13 2006