| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,276,381 – 1,276,486 |
| Length | 105 |
| Max. P | 0.651217 |
| Location | 1,276,381 – 1,276,486 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 81.49 |
| Mean single sequence MFE | -24.26 |
| Consensus MFE | -17.29 |
| Energy contribution | -17.85 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.651217 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1276381 105 + 23771897 CAUCUCCACGCCGGCCAUUUUCAGCAACAAGCCUGUGCUCAAGUCCCACAGCUUGGCGGAGUUGAAGAGGCCCCAAAACCUUCCUAAUCACUCGAUUAACCACCA ............((((.((((((((..(((((.((((.........))))))))).....))))))))))))............(((((....)))))....... ( -26.70) >DroPse_CAF1 39416 102 + 1 CAUCUCCACGCCGGCCAUCUUCAGCAACAAGCCAGUGCUCAAAUCGCACAGCCUGGCCGAGCUGAAGCGUCCGCAGAACCUGCAGAAUCCUCCG---AAUCAUCA ...........(((....(((((((.....(((((.(((..........))))))))...)))))))..((.((((...)))).)).....)))---........ ( -27.10) >DroSec_CAF1 31130 105 + 1 CAUCUCCACGCCGGCCAUUUUCAGCAACAAGCCUGUGCUCAAAUCCCACAGCUUGGCGGAGUUGAAGAGGCCCCAAAACGUCCCCAAUCAUUCGAUCAACCACCA ............((((.((((((((..(((((.((((.........))))))))).....))))))))))))................................. ( -24.70) >DroEre_CAF1 30890 105 + 1 CAUCUCCACGCCGGCCAUCUUCAGCAACAAGCCUGUGCUCAAAUCCCACAGCUUGGCGGAGUUGAAGAGACCCCAAAACCUCCCCAAUCAUUCGCUCAACCACCA ............((...((((((((..(((((.((((.........))))))))).....))))))))....))............................... ( -20.90) >DroYak_CAF1 31867 105 + 1 CAUCUCCACGCCGGCCAUCUUCAGCAACAAGCCUGUGCUCAAGUCCCACAGCUUGGCGGAGUUGAAGAGACCCCAAAACCUCCCCAAUCAAUCGCUCAAUCACCA ............((...((((((((..(((((.((((.........))))))))).....))))))))....))............................... ( -20.90) >DroMoj_CAF1 35073 84 + 1 CAUGUCCACCCCGGCGAUCUUCAGCAACAAGCCGGUGCUCAAGUCGCACAGCCUGGCGGAGCUGAAGCGUCCUCCA---------------------CAGCAUCA .((((.......((((..(((((((.....(((((.(((..........))))))))...))))))))))).....---------------------..)))).. ( -25.24) >consensus CAUCUCCACGCCGGCCAUCUUCAGCAACAAGCCUGUGCUCAAAUCCCACAGCUUGGCGGAGUUGAAGAGACCCCAAAACCUCCCCAAUCAUUCG_UCAACCACCA ............((...((((((((..(((((.((((.........))))))))).....))))))))..))................................. (-17.29 = -17.85 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:49 2006