Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 12,853,161 – 12,853,254 |
Length | 93 |
Max. P | 0.843486 |
Location | 12,853,161 – 12,853,254 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 94.48 |
Mean single sequence MFE | -23.18 |
Consensus MFE | -20.21 |
Energy contribution | -20.81 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.44 |
Structure conservation index | 0.87 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.843486 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12853161 93 - 23771897 GCCCAGUCUUGAACUUGUGUGGAUUUAAGUUCUUCUUACCCAUUAAUUAUUUAUGAGC---UGUGGGUAAAACAUAUGCCAAGGGCAACGAUAAGA ((((......(((((((........)))))))...((((((((...(((....)))..---.))))))))............)))).......... ( -25.50) >DroSec_CAF1 91516 92 - 1 GCCCAGUCUUGAACUUGUGUAG-UUUAAGUUCUUCUUAGCCAUUAAUUAUUUAUGAGC---UGUGGGUAAAACAUAUGCCAAGGGCAACGAUAAGA ((((((.((((((((.....))-))))))..))...(((((((.........))).))---))..((((.......))))..)))).......... ( -21.90) >DroSim_CAF1 92197 92 - 1 GCCCAGUCUUGAACUUGUGUGG-UUUAAGUUCUUCUUAGCCAUUAAUUAUUUAUGAGC---UGUGGGUAAAACAUAUGCCAAGGGCAACGAUAAGA ((((((.((((((((.....))-))))))..))...(((((((.........))).))---))..((((.......))))..)))).......... ( -21.90) >DroEre_CAF1 96633 94 - 1 GCCCAGUCUUGAACUUGUGUGG-CUUAAGUUCUCCUUACCCAUUAAUUAUUUAUGAGUU-UUGUGGGUAAAACAUAUGCCAAGGGCAACGAUAAGA ((((......(((((((.....-..)))))))...((((((((.((((.......))))-..))))))))............)))).......... ( -24.70) >DroYak_CAF1 102684 95 - 1 GCCCAGUCUUGAACUUGUGUGG-UUUAAGUUCUUCUUACCCAUUAAUUAUUUAUGAGUUUUUGCGGGUAAAACGUAUGCCAAGGGCAACGAUAAGA ((((((.((((((((.....))-))))))..))..((((((..(((..(((....)))..))).))))))............)))).......... ( -21.90) >consensus GCCCAGUCUUGAACUUGUGUGG_UUUAAGUUCUUCUUACCCAUUAAUUAUUUAUGAGC___UGUGGGUAAAACAUAUGCCAAGGGCAACGAUAAGA ((((......(((((((........)))))))...((((((((...................))))))))............)))).......... (-20.21 = -20.81 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:59 2006