Locus 4377

Sequence ID 3L_DroMel_CAF1
Location 12,844,321 – 12,844,411
Length 90
Max. P 0.830474
window6775

overview

Window 5

Location 12,844,321 – 12,844,411
Length 90
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 95.25
Mean single sequence MFE -23.78
Consensus MFE -20.30
Energy contribution -20.78
Covariance contribution 0.48
Combinations/Pair 1.06
Mean z-score -1.53
Structure conservation index 0.85
SVM decision value 0.71
SVM RNA-class probability 0.830474
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12844321 90 - 23771897
UUCGUGGGAAUUCAAUUUUCUGUAACCGAAAAGGCCUCAGGAUCAAUUGGAUUUUCAGGGC-AAAAGUAGUCAACUUUGACGGACAUGGCA
..(.((..((((((((((((((...((.....))...)))))..)))))))))..)).)((-....((.((((....))))..))...)). ( -25.50)
>DroSec_CAF1 85115 90 - 1
UUCGUGGGAAUUCAAUUUUCUGUGACCGAAAAGGCCUCAGGAUCAAUUGGAUUUUCAGGGC-AAAAGUAUUAAACUUUGACAGACAUGGCA
..(.((..((((((((((((((.(.((.....)).).)))))..)))))))))..)).)((-.(((((.....)))))..((....)))). ( -23.90)
>DroSim_CAF1 85570 90 - 1
UUCGUGGGAAUUCAAUUUUCUGUGACCGAAAAGGCCUCAGGAUCAAUUGGAUUUUCAGGGC-AAAAGUAUUAAACUUUGACAGACAUGGCA
..(.((..((((((((((((((.(.((.....)).).)))))..)))))))))..)).)((-.(((((.....)))))..((....)))). ( -23.90)
>DroEre_CAF1 90061 90 - 1
UUCGUGGGAAUUCAAUUUUCUGUGACCGAAAAGGCCUCAGGAUCAAUUGGAUUU-CAGGGCGAAAAGUAUUCAACUCUGACAGACAUGGCA
.(((((((((((((((((((((.(.((.....)).).)))))..))))))))))-)((((.(((.....)))..))))......))))).. ( -23.00)
>DroYak_CAF1 95827 90 - 1
UUCGUGGGAAUUCAAUUUUCUGUGACCGAAAAGGCCUCAGGAUCAAUUGGAUUU-CGGGGCAAAAAGUAUUCAACUUUGACAGGCAUGGCA
.(((..((((......))))..)))(((.....(((((..((((.....)))).-.)))))..(((((.....)))))........))).. ( -22.60)
>consensus
UUCGUGGGAAUUCAAUUUUCUGUGACCGAAAAGGCCUCAGGAUCAAUUGGAUUUUCAGGGC_AAAAGUAUUCAACUUUGACAGACAUGGCA
..(.((((((((((((((((((.(.((.....)).).)))))..))))))))))))).)((..(((((.....)))))..((....)))). (-20.30 = -20.78 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:57 2006