Locus 4375

Sequence ID 3L_DroMel_CAF1
Location 12,834,572 – 12,834,689
Length 117
Max. P 0.988811
window6773

overview

Window 3

Location 12,834,572 – 12,834,689
Length 117
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 67.72
Mean single sequence MFE -34.64
Consensus MFE -10.67
Energy contribution -13.87
Covariance contribution 3.20
Combinations/Pair 1.32
Mean z-score -2.59
Structure conservation index 0.31
SVM decision value 2.14
SVM RNA-class probability 0.988811
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12834572 117 + 23771897
UGGAUUCAGUUUACACAGCUCGACCAGGAUACUGGAAUGCAUUCGGACAUUCAGCUCUAGUUUUUCUAGAUGAGUGAUCUGCGGCACGAUCUCAAGGCUGAAUCCUAAAAGCAUUGA
.(((((((((((....((.(((.((((....))))..(((...((((((((((..(((((.....))))))))))).))))..)))))).))..)))))))))))............ ( -40.90)
>DroSec_CAF1 75587 117 + 1
UGGAUUCAGUUUACACAGCUCGACCAGGAUUCUGGAAUCCAAUCGAACAUUCAGCUCUAGUUUCUCUAGCUGAGUGAUCUGCGGCACGAUCUCAAGUCUGAAUCCUAAAAGAAUUGA
.((((((((.......((.(((.((.(((((....)))))....((.(((((((((..((.....))))))))))).))...))..))).)).....))))))))............ ( -34.60)
>DroSim_CAF1 75390 117 + 1
UGGAUUCAGUUUACACAGCUCGACCAGGAUUCUGGAAUCCAAUCGAACAUUCAGCUCUAGUUUCUCUAGCUGAGUGAUCUGCGGCACGAUCUCAAGGCUGAAUCCUAAAAGAAUUGA
.(((((((((((....((.(((.((.(((((....)))))....((.(((((((((..((.....))))))))))).))...))..))).))..)))))))))))............ ( -37.50)
>DroYak_CAF1 85399 115 + 1
UGGAUUCAGUUUAAGCAACUCGACUAGGAUACUGUCUUGCAUUCGGACAUUUAGAUGUAGCGUUUCCAGAUGGGUGAUCUGCGGCAAGAUCUCAAGGCUGUAUCCUGAAAGCAAU--
.((((.((((((.....(((((.((.(((.((.((..((((((..(....)..)))))))))).))))).)))))(((((......)))))...)))))).))))..........-- ( -29.70)
>DroAna_CAF1 69959 94 + 1
GGGAUUCGAUUGACAAAAUCCAAUUAGGAAGUCGACAUCCAUGUCGGCGUCCACGCACAAGGAUUCCAAAUUCCGAAACUCCGGAGAUAUAUCG-----------------------
((((((((((((........))))).(((.(((((((....))))))).)))........)))))))...(((((......)))))........----------------------- ( -30.50)
>consensus
UGGAUUCAGUUUACACAGCUCGACCAGGAUACUGGAAUCCAUUCGGACAUUCAGCUCUAGUUUUUCUAGAUGAGUGAUCUGCGGCACGAUCUCAAGGCUGAAUCCUAAAAGAAUUGA
.(((((((((((.......((((((((....)))).......)))).......(((.(((...(((.....)))....))).))).........)))))))))))............ (-10.67 = -13.87 +   3.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:55 2006