Locus 4373

Sequence ID 3L_DroMel_CAF1
Location 12,825,824 – 12,825,914
Length 90
Max. P 0.622302
window6770

overview

Window 0

Location 12,825,824 – 12,825,914
Length 90
Sequences 4
Columns 90
Reading direction reverse
Mean pairwise identity 83.33
Mean single sequence MFE -19.48
Consensus MFE -11.81
Energy contribution -12.62
Covariance contribution 0.81
Combinations/Pair 1.21
Mean z-score -1.97
Structure conservation index 0.61
SVM decision value 0.18
SVM RNA-class probability 0.622302
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12825824 90 - 23771897
GUUUUUGGAUGCCUCUUGAAUACUUUGAGCGUCCGAAAGCAAAAGGUGGUUCAUGAUACUUCAAUUAAAUUCUUGAUAACAUUUUAGAUC
((((((((((((.((...........))))))))))))))..((((((..(((.((..............)).)))...))))))..... ( -22.14)
>DroSec_CAF1 66980 90 - 1
GUUUUUGGAUGCCUCUUGAAUACUUUGAGCGUCCGAAAACAAAAGGUGCUUCAUGAUACUUCAAUUAAAUUCUUGAUAACAUUUAAGAUC
((((((((((((.((...........))))))))))))))...((((((.....).))))).........((((((......)))))).. ( -21.90)
>DroSim_CAF1 66809 90 - 1
GUUUUUGGAUGCCUCUUGAAUACUUUGAGCGUCCGAAAACAAAAGGUCCUUCAUGAUACUUCAAUUAAAUUCUUGAUAACAUUUAAGAUC
((((((((((((.((...........)))))))))))))).............(((....))).......((((((......)))))).. ( -21.60)
>DroEre_CAF1 71424 86 - 1
AUCUAA-GAUUUUUCUUGAUUUCUUUACGCGUCCUAAAGCAGAAGGUUUUUCAUAUUCAUU---UGAAAUUCUUGAUAACGUAUUAGAUC
...(((-((....)))))...(((.(((((........))...(((..(((((........---)))))..)))......)))..))).. ( -12.30)
>consensus
GUUUUUGGAUGCCUCUUGAAUACUUUGAGCGUCCGAAAACAAAAGGUGCUUCAUGAUACUUCAAUUAAAUUCUUGAUAACAUUUAAGAUC
(((((((((((((.............).))))))))))))..............................((((((......)))))).. (-11.81 = -12.62 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:52 2006