Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,271,182 – 1,271,275 |
Length | 93 |
Max. P | 0.993935 |
Location | 1,271,182 – 1,271,275 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 73.89 |
Mean single sequence MFE | -31.00 |
Consensus MFE | -5.92 |
Energy contribution | -8.23 |
Covariance contribution | 2.31 |
Combinations/Pair | 1.10 |
Mean z-score | -2.50 |
Structure conservation index | 0.19 |
SVM decision value | 2.44 |
SVM RNA-class probability | 0.993935 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1271182 93 + 23771897 UGCCUGUG---GGUGAUGG-------GUGGUGGCAGACCGACCUAUCCCGAACCACCACCCACUUGCCACCCGCUUGCCACUAUUUCGAACUAAACGAAAAUC .((..(((---((((.(((-------(((((((.....((........))..)))))))))).....)))))))..)).....(((((.......)))))... ( -34.70) >DroSec_CAF1 25905 92 + 1 GGUCGG-GGGGGGUGUUGG----------GUGGCAGACCGACCUAUCCCGAACCACCACCCAGUUGCCACCCACUUGCCACUAUUUCGAACUAAACGAAAAUC ((.(((-(((((((..(((----------((((..(..((........))..)..)))))))...))).))).))))))....(((((.......)))))... ( -31.10) >DroSim_CAF1 26352 89 + 1 GGUCGG-G---GGUGUUGG----------GUGGCAGACCGACCUAUCCCGAACCACCACCCAGUUGCCACCCACUUGCCACUAUUUCGAACUAAACGAAAAUC (((.((-(---((((((((----------((((..(..((........))..)..))))))))....))))).)).)))....(((((.......)))))... ( -29.60) >DroEre_CAF1 25707 72 + 1 GGCCCGGA---GGUGGUGG--------------GCGGCAGACCUAUCCCGAACCA--------------CCCACUUGCCACUAUUUCGAGCUAAACGAAAAUC (((..(..---((((((((--------------(.((....))...)))..))))--------------))..)..)))....(((((.......)))))... ( -22.60) >DroYak_CAF1 26492 86 + 1 CACCGAAG---GGUGGUGGGUGGUGGGUGGUGGUUGGCAGACCUAUCCCAAACCA--------------CCCACUUGCCACUAUUUCGAACUAAACGAAAAUC ((((....---))))((((..((((((((((((..((....))...))...))))--------------))))))..))))..(((((.......)))))... ( -37.00) >consensus GGCCGG_G___GGUGGUGG__________GUGGCAGACCGACCUAUCCCGAACCACCACCCA_UUGCCACCCACUUGCCACUAUUUCGAACUAAACGAAAAUC ...........((((((((..........(((((((...........................)))))))))).)))))....(((((.......)))))... ( -5.92 = -8.23 + 2.31)
Location | 1,271,182 – 1,271,275 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 73.89 |
Mean single sequence MFE | -32.30 |
Consensus MFE | -8.22 |
Energy contribution | -10.62 |
Covariance contribution | 2.40 |
Combinations/Pair | 1.09 |
Mean z-score | -1.68 |
Structure conservation index | 0.25 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.624326 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1271182 93 - 23771897 GAUUUUCGUUUAGUUCGAAAUAGUGGCAAGCGGGUGGCAAGUGGGUGGUGGUUCGGGAUAGGUCGGUCUGCCACCAC-------CCAUCACC---CACAGGCA ...(((((.......))))).....((..(.(((((....((((((((((((...((((......))))))))))))-------))))))))---).)..)). ( -39.20) >DroSec_CAF1 25905 92 - 1 GAUUUUCGUUUAGUUCGAAAUAGUGGCAAGUGGGUGGCAACUGGGUGGUGGUUCGGGAUAGGUCGGUCUGCCAC----------CCAACACCCCCC-CCGACC ...(((((.......)))))...(((...(.(((((.....(((((((..(..(((......)))..)..))))----------))).))))))..-)))... ( -32.20) >DroSim_CAF1 26352 89 - 1 GAUUUUCGUUUAGUUCGAAAUAGUGGCAAGUGGGUGGCAACUGGGUGGUGGUUCGGGAUAGGUCGGUCUGCCAC----------CCAACACC---C-CCGACC ...(((((.......)))))....((...(.(((((.....(((((((..(..(((......)))..)..))))----------))).))))---)-.)..)) ( -31.40) >DroEre_CAF1 25707 72 - 1 GAUUUUCGUUUAGCUCGAAAUAGUGGCAAGUGGG--------------UGGUUCGGGAUAGGUCUGCCGC--------------CCACCACC---UCCGGGCC ...(((((.......)))))....(((..(..((--------------((((..(((...((....)).)--------------))))))))---..)..))) ( -27.30) >DroYak_CAF1 26492 86 - 1 GAUUUUCGUUUAGUUCGAAAUAGUGGCAAGUGGG--------------UGGUUUGGGAUAGGUCUGCCAACCACCACCCACCACCCACCACC---CUUCGGUG ...(((((.......)))))..((((...(((((--------------((((((((.(......).))))..)))))))))...))))((((---....)))) ( -31.40) >consensus GAUUUUCGUUUAGUUCGAAAUAGUGGCAAGUGGGUGGCAA_UGGGUGGUGGUUCGGGAUAGGUCGGUCUGCCAC__________CCAACACC___C_CCGGCC ...(((((.......)))))..((((....(((...........(((((((.((((......)))).)))))))..........)))))))............ ( -8.22 = -10.62 + 2.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:48 2006