| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,817,157 – 12,817,247 |
| Length | 90 |
| Max. P | 0.852690 |
| Location | 12,817,157 – 12,817,247 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 72.58 |
| Mean single sequence MFE | -17.70 |
| Consensus MFE | -10.88 |
| Energy contribution | -13.25 |
| Covariance contribution | 2.38 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.852690 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12817157 90 + 23771897 CUAUUCAUUCUUUGAUGGUAUAAGAGAGAUAUUCUCUUAAAUACCAAAAGGCUCUGUAAUAAUUAAAGAG---GUAUAAUAACGCCUAUUAGG- (((............((((((..(((((.....)))))..))))))..(((((((...........))).---((......))))))..))).- ( -17.50) >DroSec_CAF1 58400 93 + 1 CUAUUCAUUCUGUGAUGGUUUUAGAGAGAUAUUUUCUUAAAUACCAAAAGCCUCUUUACUUAUUAAAGAGGAGGUAUAAAAAAGUCUAUAAGG- .........((..(((..(((((((((((...))))))...((((.....((((((((.....)))))))).)))))))))..)))....)).- ( -18.80) >DroSim_CAF1 58055 92 + 1 CUAUUCAUUCUGUGAUGGUAUUAGAGAGAUAUUUUCUCAAAUACCAAAAGACUCUUUACUUAGUGAAGAGGA-GUAUAAUAAAGUCUAUAAGG- .(((((..(((....(((((((.((((((...)))))).)))))))..)))((((((((...))))))))))-))).................- ( -24.90) >DroEre_CAF1 62623 78 + 1 ------AAU---UUAUGGUAAAAU--AUAUAUUCUCCUAAAUAUCAAAGGCCUAAUUGAUUAUUGAAGAGGG-GUAUAAA---A-CUAAAUGCU ------...---............--.(((((((..((.((((((((........)))).))))..))..))-)))))..---.-......... ( -9.60) >consensus CUAUUCAUUCUGUGAUGGUAUAAGAGAGAUAUUCUCUUAAAUACCAAAAGCCUCUUUAAUUAUUAAAGAGGA_GUAUAAAAAAGUCUAUAAGG_ ...............(((((((.(((((.....))))).)))))))....(((((((((...)))))))))....................... (-10.88 = -13.25 + 2.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:42 2006