| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,812,415 – 12,812,510 |
| Length | 95 |
| Max. P | 0.589891 |
| Location | 12,812,415 – 12,812,510 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 77.81 |
| Mean single sequence MFE | -14.46 |
| Consensus MFE | -2.08 |
| Energy contribution | -3.40 |
| Covariance contribution | 1.32 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.14 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.589891 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12812415 95 + 23771897 AUAACAGAAAUAUCGCCUAUUUCUA-GACAAAUACGAGUCUUUUGACUCGAACGACAAACAA--AAUUUUGAAAAAA-AAAAA------AACUGAUAAGAAAUUA- .....(((((((.....))))))).-........((((((....))))))............--..((((....)))-)....------................- ( -14.00) >DroSec_CAF1 53802 94 + 1 AUAACAGAAAUAUCGCCUAUUUCUA-GGCAAAUACGAGUCUUUUGAGUCGAACGACAAACAA--AUUUUUGAAAAA--AAAAA------CACUGAUAAGAAAUUA- ....(((((((...(((((....))-))).....(((.((....)).)))............--))))))).....--.....------................- ( -16.80) >DroSim_CAF1 53395 96 + 1 AUAACAGAAAUAUCGCCUAUUUCUA-GGCAAAUACGAGUCUUUUGAGUCGAACGACAAACAA--AAUUUUGAAAAAAAAAAAA------CACUGAUAAGAAAUUA- ....(((.....(((((((....))-))).....(((.((....)).)))...)).......--..((((....)))).....------..)))...........- ( -15.90) >DroYak_CAF1 57170 92 + 1 AUAACAGAAAUAUCGCCUAUUUCUAUGGCAAAUACAAGUCUUUUGAGUCAAAAGUCAAACAA--AAUUU-GAAA----UAUAA------CGCUGAUAAGAAAUUA- ....(((.......(((.........)))........(.((((((...)))))).)......--.....-....----.....------..)))...........- ( -10.60) >DroAna_CAF1 49609 102 + 1 AUAACAGAAAUAUAAGCAA---CUA-AACAAAUAAUAGACUUUCCAGUCAAGCCACAAAUGAGCAUUUUUGAAUGAAUUGGCACUUGGCGACUGAUAAGCUUUUUG ...................---...-..((((....((.(((..(((((..((((.....(.((...(((....)))...)).).)))))))))..))))).)))) ( -15.00) >consensus AUAACAGAAAUAUCGCCUAUUUCUA_GGCAAAUACGAGUCUUUUGAGUCGAACGACAAACAA__AAUUUUGAAAAAA_AAAAA______CACUGAUAAGAAAUUA_ ....(((.......(((.........)))........(((.(((.....))).)))...................................)))............ ( -2.08 = -3.40 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:41 2006