Locus 4365

Sequence ID 3L_DroMel_CAF1
Location 12,808,159 – 12,808,260
Length 101
Max. P 0.721872
window6755

overview

Window 5

Location 12,808,159 – 12,808,260
Length 101
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 73.44
Mean single sequence MFE -32.90
Consensus MFE -22.83
Energy contribution -22.63
Covariance contribution -0.19
Combinations/Pair 1.29
Mean z-score -1.04
Structure conservation index 0.69
SVM decision value 0.40
SVM RNA-class probability 0.721872
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12808159 101 - 23771897
ACG-CAAA-CGC-UU--UCG----CAGCAGGUGAGCCUGCUUUUAGGCGCU-CUGCGAGCCUGUUCCCAUCGUGGAGCGUGCCAAAUGUUUGGUUGUGUUCCAAGUCC-CGC
(((-((.(-(((-((--...----.((((((....))))))...))))(((-(..(((...........)))..))))))(((((....)))))))))).........-... ( -35.00)
>DroPse_CAF1 75921 106 - 1
AUG-GAAA-UGC-UG--AAACAGUCAGCAGGUGAGCAUGCUUUUAGGCGUUGCUGUGCGCCUGAUCCCAGCAUUGAGCGUGCCAAAUGUUUGGUUGAAUUCCAGGUCU-CGG
.((-(((.-(((-((--(.....))))))..((.((((((((((((((((......))))))))..........))))))))))..............))))).....-... ( -35.40)
>DroGri_CAF1 63191 99 - 1
AAA-CAAG-AG--UG--UAG----AUGCAGGUGAGCAUGCUUUUAGGCGCU-CUGUGCGCCUGGCCCCAACUAGAAGCGUGCCAAAUGUUUGGUUGUAUUUCA-GUCC-CAG
...-...(-(.--((--.((----((((((.(((((((((((((((((((.-....)))))((....))..))))))))))).......))).))))))))))-.)).-... ( -33.81)
>DroWil_CAF1 69579 98 - 1
ACA-CAAU-C-------UAC----AUGCAGGUAAGCAUGCUUUUAGGCGCU-CUGUGCUCCUGUUCCCAGCAUGAGGCAUGCCAAAUGUUUGGUUGUAUUUCAUGUUCUCGA
..(-((((-(-------.((----(((((.((...((((((..((((.((.-....)).)))).....))))))..)).)))...))))..))))))............... ( -27.00)
>DroMoj_CAF1 60255 95 - 1
AUACCAAG-AGCU-------------ACGUGUGAGCAUGCUUUUAGGCGCU-CUGUGCGCCUGGUUCGAGCUUGAAGCGUGCCAAAUGUUUGGUUGUAUUUCA-GUCC-CAG
..(((((.-....-------------((((.((.((((((((((((((((.-....)))))))((....))..))))))))))).))))))))).........-....-... ( -30.60)
>DroAna_CAF1 45779 103 - 1
GGG-GAAAGCGU-CUGGUCG----CAGCAGGUGAGCAUGCUUUUAGGCGCC-CUGGGCCCCUGUUCCAAGCAUGGAGCGUGCCAAAUGUUUGGUUGAAUCCCAAGUCC--GA
.((-((..(((.-.....))----)((((..((.((((((...((((.(((-...))).)))).((((....))))))))))))..))))........))))......--.. ( -35.60)
>consensus
ACA_CAAA_CGC_U___UAG____CAGCAGGUGAGCAUGCUUUUAGGCGCU_CUGUGCGCCUGUUCCCAGCAUGAAGCGUGCCAAAUGUUUGGUUGUAUUCCA_GUCC_CGG
..........................(((..((.((((((((((((((((......)))))))..........)))))))))))..))).(((.......)))......... (-22.83 = -22.63 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:39 2006