| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,805,871 – 12,805,974 |
| Length | 103 |
| Max. P | 0.519892 |
| Location | 12,805,871 – 12,805,974 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 80.57 |
| Mean single sequence MFE | -38.98 |
| Consensus MFE | -27.61 |
| Energy contribution | -28.00 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.71 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.519892 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12805871 103 + 23771897 GAUUUUGACCGGCUGUCUGGAGCCGUACUUGGCUCCAUUUUCGGCGGAUUCCAGCAGGUGGGAGCUCUCCUCGUUGUUGGAGCCGGACUUUUUGUUGGCCUCC--------- ..........((((...((((((((....))))))))..((((((....((((((((..((((....))))..)))))))))))))).........))))...--------- ( -42.40) >DroVir_CAF1 64064 103 + 1 GAUUUUUACCGCUUGCCGGGAACCAUAUUUGGCACCGUUCUCGUUGGCCUCCAGCAGGUGGGAGCUCUCCUCGUUGCUGGCAUCGGGCUUCUUGUUGGGCUCA--------- ..........((((..((((((((......(((..((....))...))).(((((((..((((....))))..))))))).....)).))))))..))))...--------- ( -33.30) >DroPse_CAF1 73247 112 + 1 GAUUUUUACCGCUUGGCGGGAGCCAUAUUUGGCACCGUUCUCGGCGGCCUCCAGCAGGUGGGAGCUCUCCUCGUUGCUAGUGCCAGGCUUCCUUGGGGCCUGCUCCUCUGCC ........(((((.(((((..((((....)))).)))))...)))))......((((..((((((..........((....)).((((((.....)))))))))))))))). ( -44.00) >DroGri_CAF1 60430 103 + 1 GAUUUUUACCGCUUGCCGAGAGCCAUAUUUGGCACCGUUCUCGUUGGUCUCCAGCAGGUGGGAGCUCUCCUCAUUGCUGGCAUCGGGCUUUUUGUUGGGCUCA--------- ........((((((((.((((((((....)))).(((.......)))))))..))))))))((((((..(.....(((.(...).))).....)..)))))).--------- ( -37.80) >DroMoj_CAF1 57304 103 + 1 GAUUUUUACCGCUUGCCGGGAACCAUAUUUGGCACCGUUCUCAGUGGCCUCCAGCAGGUGGGAGCUCUCCUCGCUGUUGACACCGGGCUUUUUGUUGGGCUCA--------- ........((((((((.(((..((((...((....))......))))..))).))))))))((((((..((((.((....)).)))).........)))))).--------- ( -32.40) >DroPer_CAF1 71581 112 + 1 GAUUUUUACCGCUUGGCGGGAGCCAUAUUUGGCACCGUUCUCGGCGGCCUCCAGCAGGUGGGAGCUCUCCUCGUUGCUAGUGCCAGGCUUCCUUGGGGCCUGCUCCUCUGCC ........(((((.(((((..((((....)))).)))))...)))))......((((..((((((..........((....)).((((((.....)))))))))))))))). ( -44.00) >consensus GAUUUUUACCGCUUGCCGGGAGCCAUAUUUGGCACCGUUCUCGGCGGCCUCCAGCAGGUGGGAGCUCUCCUCGUUGCUGGCACCGGGCUUCUUGUUGGCCUCA_________ ..............(((.((.((((....)))).))...(((((((....(((((((..((((....))))..))))))))))))))..........)))............ (-27.61 = -28.00 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:38 2006