| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,801,356 – 12,801,476 |
| Length | 120 |
| Max. P | 0.764920 |
| Location | 12,801,356 – 12,801,476 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.83 |
| Mean single sequence MFE | -54.53 |
| Consensus MFE | -27.80 |
| Energy contribution | -29.08 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.764920 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12801356 120 - 23771897 CCAGAAGUGGCCACAAUAUGUGGCCGCAUUGGCCGCUGCUGGUGGCGCCUUCGCCGCCGGUACCGUCCUGGGUUGGACAUCGCCGGCCGAAACGGAGAUCGUGGAUCGCGGCGAAGGAUA ((....((((((((.....)))))))).((.((((((((((((((((....)))))))))))((((..(.((((((......)))))).).)))).((((...))))))))).))))... ( -64.10) >DroPse_CAF1 69364 120 - 1 CAAGAAGCUGCCACAGUAUGUGGCCGCUCUGGCAGCAGCUGGCGGUGCCUUCGCCGCCGGUACCGUGCUGGGCUGGACAUCGCCCGCCCAACCGCAGAUCGUCGACGGUGGCGAGGGCUA .....(((.(((((.....))))).)))(((.(((...))).))).(((((((((((((....((((((((((.((......)).)))))...)))...))....))))))))))))).. ( -58.90) >DroGri_CAF1 56328 120 - 1 GAAGGUCUUGCCGCAAUAUGUUGCCGCCUUGGCAGCAGCUGGUGGUGCAUUCGCAGCGGGCACAGUGCUUGGCUGGACAUCGCCAGCAGAUACGCCAAUCGUCGCCGAUGGCACCGCCUA ..((((..((((((....(((((((.....)))))))((((((((((...((.((((((((.....)))).))))))))))))))))......))..((((....))))))))..)))). ( -52.90) >DroWil_CAF1 61004 117 - 1 CAGGACAUUUCCGCAAUAUGUUGCCGCCUUGGCAGCAGCUGGCGGAGCCUUUGCCUGCGGUACACUCCUCGGUUGGACAUCGCCGGCUCAAACGGAAAUCGUUGAUAAUCCCGA---UUA ...((((((((((.....(((((((.....)))))))(((((((..(((...(((.(.((......)).)))).)).)..))))))).....))))))).)))...........---... ( -42.40) >DroAna_CAF1 37821 120 - 1 CCGGAAGUUGCCCCAGUAUGUGGCGGCUCUGGCAGCCGCUGGUGGUGCUUUCGCUUGCGGCACCCUUCUGGGAUGGACAUCGCCCGCCCAGACAAAGAUCGUAGACAAUGGCACCGGAUA ((((.(((((((.(.....).))))))).((.(((((((.(((((.....))))).))))).....((((((.(((.......)))))))))................)).))))))... ( -47.00) >DroPer_CAF1 67758 120 - 1 CAAGAAGCUGCCACAGUAUGUGGCCGCUCUGGCAGCAGCUGGCGGUGCCUUCGCCGCCGGUACCGUGCUGGGCUGGACAUCGCCCGCCCAACCGCAGAUCGUGGACGGUGGCGAGGGCUA .....(((.(((((.....))))).)))(((.(((...))).))).(((((((((((((.........(((((.((......)).))))).((((.....)))).))))))))))))).. ( -61.90) >consensus CAAGAAGUUGCCACAAUAUGUGGCCGCUCUGGCAGCAGCUGGCGGUGCCUUCGCCGCCGGUACCGUGCUGGGCUGGACAUCGCCCGCCCAAACGCAGAUCGUCGACGAUGGCGACGGCUA .........(((((.....)))))(((((((.(.((.((((((((((....))))))))))....((((((((.((......)).)))))...)))....)).).))).))))....... (-27.80 = -29.08 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:37 2006