Locus 436

Sequence ID 3L_DroMel_CAF1
Location 1,269,662 – 1,269,777
Length 115
Max. P 0.738138
window636

overview

Window 6

Location 1,269,662 – 1,269,777
Length 115
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 74.70
Mean single sequence MFE -17.81
Consensus MFE -2.58
Energy contribution -1.06
Covariance contribution -1.52
Combinations/Pair 1.50
Mean z-score -1.62
Structure conservation index 0.14
SVM decision value 0.44
SVM RNA-class probability 0.738138
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1269662 115 + 23771897
AAAUAAUCCAAUUUUAAUAAUAUUUUGUGUACAUGGUAACCGCACCAUAAAACCCAAUAAAAGCGGCAUAAAAACUUAACGGCG--CAAAAACAUAAGAGAAAAAUGGGCAAAUUGA
......((((.((((.......((((((((..(((((......)))))..............(((.(.............).))--)....)))))))).)))).))))........ ( -17.72)
>DroPse_CAF1 31993 116 + 1
AACUCUUCAUAGCCUAA-GAUAUCACUUUUACAGGGUAGCAGGCCCAUAAAACACUAUGAAAAUCGCAUAAAAACUUAACUAGGCAUAAAAAGAGGAAAGGAAAAAACACAAAUUGA
..(((((..(((((((.-...............((((.....)))).........((((.......))))..........))))).))..)))))...................... ( -18.80)
>DroSim_CAF1 24832 114 + 1
AAAUAAUCCAAU-UUAAAUAUAUUUUGUGUACAUGGUAACCGCAACAUAAAACCCAAUAAAAGCCGCAUAAAAACUUAACGGCG--CAAAAACAUAAGAGGAAAAUGGGCAAAUUGA
........((((-((.......((((((((...(((...)))..))))))))((((......((((.............)))).--......(......).....)))).)))))). ( -17.02)
>DroEre_CAF1 24255 112 + 1
AAAUAAUCA-AU-UUAGAAAACAUUUGUGUACUCGGUAACCGCACCAUAAAACCCAAUAAAAGGCGCAUAAAAGCUUAGCGGGG--CAAAAACAUAAGAGAAAACU-GGCAAAUUGA
......(((-((-((.....(((....))).((((((......)))......(((......((((........))))....)))--...........)))......-...))))))) ( -16.70)
>DroPer_CAF1 32166 116 + 1
AACUCUUCAUAGCCUAA-GAUAUCACUUUUACAGGGUAGCAGGCCCAUAAAACACUAUGAAAAUCGCAUAAAAACUUAACUAGGCAUAAAAAGAGGAAAGGAAAAAACACAAAUUGA
..(((((..(((((((.-...............((((.....)))).........((((.......))))..........))))).))..)))))...................... ( -18.80)
>consensus
AAAUAAUCAAAU_UUAA_AAUAUUUUGUGUACAGGGUAACCGCACCAUAAAACCCAAUAAAAGCCGCAUAAAAACUUAACGGGG__CAAAAACAUAAGAGGAAAAUAGGCAAAUUGA
.........................(((((.........(((.....................................))).........)))))..................... ( -2.58 =  -1.06 +  -1.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:46 2006