| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,796,781 – 12,796,879 |
| Length | 98 |
| Max. P | 0.724972 |
| Location | 12,796,781 – 12,796,879 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 82.53 |
| Mean single sequence MFE | -23.32 |
| Consensus MFE | -16.92 |
| Energy contribution | -16.73 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.724972 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12796781 98 + 23771897 UCUAUGCGCUAUUCUUAUGGUAAAGUUAAAAACGAAGACGAUUGGAAACAGUUGGCACCGUUUGAGGGCUUUAACAAAGAAGGUAUG-----UAAAACAGAAA ..(((..(((.(((((.((.(((((((..(((((....((((((....))))))....)))))...))))))).))))))))))..)-----))......... ( -26.20) >DroGri_CAF1 51450 99 + 1 UCCAUGCGCUUAGCCUAUGGUAAGGU---GGAUGACAACGCUUGGAUGCAGCUGGCGCCAUUCGAGGGAUUCAAUAAACAACGUAUGCAUAUUAA-UUAACAU ..(((.(((((.(((...))).))))---).)))....(.((((((((..((....)))))))))).)...........................-....... ( -21.10) >DroSec_CAF1 38186 98 + 1 UCUAUGCGCUAUUCUUAUGGUAAAGUUAAAAACGAAGACGAUUGGAAACAAUUGGCACCGUUUGAGGGCUUUAACAAAGAAGGUAUA-----UAAAACAGAAA ..((((..((.(((((.((.(((((((..(((((....((((((....))))))....)))))...))))))).)))))))))..))-----))......... ( -26.90) >DroSim_CAF1 37463 98 + 1 UCUAUGCGCUAUUCUUAUGGUAAAGUUAAAAACGAAGACGAUUGGAAACAGUUGGCACCGUUUGAGGGCUUUAACAAAGAAGGUAAA-----UAAAACAGAAA ..(((..(((.(((((.((.(((((((..(((((....((((((....))))))....)))))...))))))).))))))))))..)-----))......... ( -25.40) >DroEre_CAF1 42417 97 + 1 UCUAUGCGCUAUGCCUAUGGUAAAGUUAUAAACGAAGACGAUUGGAAACAACUGGCACCGUUUGAGGGCUUCAAUAAAGAAGGUAUG-----U-AAACAGAAA (((.((((((.((((...)))).)))............((.(((....))).)))))..(((((..(.((((......)))).)...-----)-))))))).. ( -19.80) >DroYak_CAF1 40692 97 + 1 UCUAUGCGCUAUGCUUAUGGUAAAGUUGUGAACGAAGACGAUUGGAGACAAUUGGCACCGUUUGAGGGCUUCAACAAAGAAGGUACG-----A-AAUCAGAAA ....((..((...(((.((...(((((.((((((....((((((....))))))....))))).).)))))...)))))..))..))-----.-......... ( -20.50) >consensus UCUAUGCGCUAUGCUUAUGGUAAAGUUAAAAACGAAGACGAUUGGAAACAAUUGGCACCGUUUGAGGGCUUCAACAAAGAAGGUAUG_____UAAAACAGAAA ..((((((((((....))))).(((((..(((((....((((((....))))))....)))))...)))))...........)))))................ (-16.92 = -16.73 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:30 2006