Locus 4358

Sequence ID 3L_DroMel_CAF1
Location 12,796,170 – 12,796,277
Length 107
Max. P 0.849404
window6746

overview

Window 6

Location 12,796,170 – 12,796,277
Length 107
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 77.97
Mean single sequence MFE -26.21
Consensus MFE -15.83
Energy contribution -16.61
Covariance contribution 0.78
Combinations/Pair 1.27
Mean z-score -1.86
Structure conservation index 0.60
SVM decision value 0.78
SVM RNA-class probability 0.849404
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12796170 107 - 23771897
CAUCGAAGUCGUUCUUUGCGGAAGCUCCCUCUCCCGACUUUUGUGUUGUCAGGGCUUCGCCAAUUUUCUUUAAUUUGGUUUCAGCUCUGAA-GGUAACAACAU-------UGUUU
....(((((((......((....)).........))))))).((((((((((((((..(((((.((.....)).)))))...)))))))).-.....))))))-------..... ( -29.76)
>DroPse_CAF1 62264 108 - 1
CUUCAAAAUCGC--CUUUCGGAUUGUCAU----UCGUUUCUUGGGUUUUCAGUUCGGCCUCAAUUUUCUUCAACUUGUUUUCGGCUCUGGAAAAUACCCA-AUACAGAGAUGAAU
......((((..--......))))...((----(((((((((((((((((((...((((.......................))))))))))...)))))-....)))))))))) ( -23.40)
>DroSec_CAF1 37575 106 - 1
CAUCGAAGUCGUUCUUUGCGGAAGCUCCCUCUCCUGACUUUUGUGUUGUCAGGGCUUCUCCAAUUUUCUUUAAUUUGGUUUCAGCUCUGAA-CGUACUAA-AU-------UGUAU
(((.(((((((......((....)).........))))))).)))...((((((((...((((.((.....)).))))....)))))))).-.((((...-..-------.)))) ( -27.26)
>DroSim_CAF1 36853 106 - 1
CAUCGAAGUCGUUCUUUGCGGAAGCUCCCUCUCCUGACUUUUGUGUUGUCAGGGCUUCUCCAAUUUUCUUUAAUUUGGUUUCAGCUCUGAA-GUUAAUAA-AU-------UAUAU
(((.(((((((......((....)).........))))))).)))...((((((((...((((.((.....)).))))....)))))))).-........-..-------..... ( -25.96)
>DroEre_CAF1 41806 107 - 1
CAUCGAAAUCGUUCUUUGCGGAGGCCCCCUCCACCGAAUUUUGCGUUGUCAGGGCUUCUCCAAUUUUCUUUAAUUUGGUUUCAGCUCUGAA-AGUAAAUA-AU------AUGUGU
..(((.....((.....))(((((...)))))..)))..(((((....((((((((...((((.((.....)).))))....)))))))).-.)))))..-..------...... ( -27.60)
>DroYak_CAF1 40079 106 - 1
CAUCGAAAUCGUUCUUUGCGGUAGCCCCAUCCCCCGACUUUUGGGUUGUCAAGGCUUCUCCAAUUUUCUUUAACUUGGUUUCGGCUCUGAA-GGUGAUGA-AU-------UGUAU
((((...(((((.....))))).(((......(((((...)))))...(((..(((...((((.((.....)).))))....)))..))).-))))))).-..-------..... ( -23.30)
>consensus
CAUCGAAAUCGUUCUUUGCGGAAGCUCCCUCUCCCGACUUUUGUGUUGUCAGGGCUUCUCCAAUUUUCUUUAAUUUGGUUUCAGCUCUGAA_GGUAAUAA_AU_______UGUAU
(((.(((((((......((....)).........))))))).)))...((((((((...((((.((.....)).))))....))))))))......................... (-15.83 = -16.61 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:29 2006