Locus 4357

Sequence ID 3L_DroMel_CAF1
Location 12,791,897 – 12,792,011
Length 114
Max. P 0.619379
window6745

overview

Window 5

Location 12,791,897 – 12,792,011
Length 114
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 76.35
Mean single sequence MFE -28.53
Consensus MFE -12.26
Energy contribution -11.54
Covariance contribution -0.71
Combinations/Pair 1.64
Mean z-score -2.06
Structure conservation index 0.43
SVM decision value 0.18
SVM RNA-class probability 0.619379
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12791897 114 - 23771897
AUGUUACACUGCUUUGCAUUUUUACUGCGUUCGGGCUAAUCCUCAGUACAUUUGUACUGUCG---CUGCUUAUAUCCAAAGUAGCAUGCAAUAUAUUCAUAUCGUCCAUUUUAACAA
.(((((.........(((.......)))....((((.......((((((....))))))..(---((((((.......)))))))..................))))....))))). ( -25.90)
>DroVir_CAF1 50977 117 - 1
GACGUGCGCUGCUUUGCAAUUUGAUGGCAUUGGGACUAAUACACAAGACAUUCGGCUUGUUGCCGCCAUUCACAUUCAAUGUGGCAUGCAAUAUAUCCAUAUCCUGCAUUUGCAAUA
....(((((..(.(((.(((.(((((((.((((........).))).......(((.....))))))).))).)))))).)..))(((((..(((....)))..)))))..)))... ( -30.10)
>DroSec_CAF1 33304 114 - 1
AUGUUGCACUGCUUUGCAUUUUAACUGCGUUCGGGCUAAUCCUCAGUACAUUUGUACUGUCG---CUGUUUAUAUCCAAGGUAGCAUGCAAUAUGUUCAUAUCGUCCAUUUUAACAA
((((((((((((((((.((...(((.(((...(((....))).((((((....)))))).))---).)))...)).))))))))..))))))))....................... ( -30.40)
>DroEre_CAF1 37589 114 - 1
CUGUUACACUGCUUUGCAUUUUCACUGCGUUGGGACUGAUCCGCAGUACAUUUGUACUGUCG---CUGCUUAUGUCCAAAGUAGCGUGCAAUAUAUUCAUAUCGUCCAUUUUGACAA
.(((((((.(((..((......))..))).))((((.(((..(((((((....)))))))((---((((((.......))))))))..............)))))))....))))). ( -31.00)
>DroYak_CAF1 35861 114 - 1
CUGAAACACUGCUUUGCAUUCUCACUGCGUUUGGACUGAUCCGCAGUACGUUCGUACUGUCG---CUGUUUAUGUCCAAAGUAGCGUGCAAUAUAUUCAUAUCGUCCAUUUUGACGA
.((((....((..((((((.....((((.(((((((.(((.((((((((....)))))).))---..)))...))))))))))).))))))..))))))..(((((......))))) ( -32.10)
>DroAna_CAF1 25550 114 - 1
CUUCGACACUCUUCUGCAACUUUACAGCAUUGGGACUUAUGCGAAGAAUGUUGGUACUAUCA---CUGUUCACAUCCAAUGUGGCGUGCAAUAUAUUCACGUCAUCCAUUUUCAAAA
..((((((.(((((((........))((((........))))))))).))))))........---...............((((((((.((....))))))))))............ ( -21.70)
>consensus
CUGUUACACUGCUUUGCAUUUUCACUGCGUUGGGACUAAUCCGCAGUACAUUUGUACUGUCG___CUGUUUAUAUCCAAAGUAGCAUGCAAUAUAUUCAUAUCGUCCAUUUUAACAA
.............((((((.((.(((......((((......(((((((....))))))).......))))........))))).)))))).......................... (-12.26 = -11.54 +  -0.71)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:28 2006