Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 12,780,829 – 12,780,941 |
Length | 112 |
Max. P | 0.581500 |
Location | 12,780,829 – 12,780,941 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 83.45 |
Mean single sequence MFE | -19.30 |
Consensus MFE | -13.44 |
Energy contribution | -14.63 |
Covariance contribution | 1.19 |
Combinations/Pair | 1.06 |
Mean z-score | -1.91 |
Structure conservation index | 0.70 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.581500 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12780829 112 + 23771897 UUAAGAUACGCACCCAACAACUGCACACCCAUGCAGUGCCAUCGUUGUCAUUGCUGCCAUCUAUAUAUCCAUCAUCAUCAUCAUCAUCUCUGGCAGCCACUGGAUCUUUAUC ..(((((.......((((.((((((......))))))......))))(((..(((((((...............................)))))))...)))))))).... ( -20.78) >DroSec_CAF1 22575 109 + 1 UUAAGAUACGCACCCAACAACUGCACACCCAUGCAGUGCCAUCGUUGUCAUUGCUGCCAUCUAUAUAUCCAUCAUCA---UCAUCAUCUCUGGCAGCCACUGGAUCUUUAUC ..(((((.......((((.((((((......))))))......))))(((..(((((((..................---..........)))))))...)))))))).... ( -20.89) >DroSim_CAF1 21885 109 + 1 UUAAGAUACGCACCCAACAACUGCACACCCAUGCAGUGCCAUCGUUGUCAUUGCUGCCAUCUAUAUAUCCAUCAUCA---UCAUCAUCUCUGGCAGCCACUGGAUCUUUAUC ..(((((.......((((.((((((......))))))......))))(((..(((((((..................---..........)))))))...)))))))).... ( -20.89) >DroEre_CAF1 25972 109 + 1 UUAAGAUACGCACCCAACAACUGCACACACAUGCAGUGCCAUCGUUGUCAUUGCUGCCAUCUAUAUAUCCAUCAUCA---UCAUCAUCUCUGGCAGCCACUGGAUCUCUAUC ...((((.......((((.((((((......))))))......))))(((..(((((((..................---..........)))))))...)))))))..... ( -20.09) >DroYak_CAF1 24556 109 + 1 UUAAGAUACGCACCCAACAACUGCACACCCAUGCAGUGCCAUCGUUGUCAUUGCUGCCAUCUAUAUAUCCAUCAUCA---UCAUCAUCUCUGGCAGCCACUGGAUCUUUAUC ..(((((.......((((.((((((......))))))......))))(((..(((((((..................---..........)))))))...)))))))).... ( -20.89) >DroAna_CAF1 16769 86 + 1 UUAAGAUACGCACCCAGCCAUUUCUUCCUCAUGCACCAUCAU---------UGCUGUCAUCGGUUCAAGUCACUUCA---UCGUCAUCGGUGGCACCC-------------- ..((((...((.....))....))))......(((.......---------)))((((((((((.............---.....))))))))))...-------------- ( -12.27) >consensus UUAAGAUACGCACCCAACAACUGCACACCCAUGCAGUGCCAUCGUUGUCAUUGCUGCCAUCUAUAUAUCCAUCAUCA___UCAUCAUCUCUGGCAGCCACUGGAUCUUUAUC .............(((...((((((......))))))...............(((((((...............................)))))))...)))......... (-13.44 = -14.63 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:25 2006