| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,779,908 – 12,780,022 |
| Length | 114 |
| Max. P | 0.779403 |
| Location | 12,779,908 – 12,780,022 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 69.83 |
| Mean single sequence MFE | -23.31 |
| Consensus MFE | -10.51 |
| Energy contribution | -13.50 |
| Covariance contribution | 2.99 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.779403 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12779908 114 + 23771897 CAAGAAAAACUUCUCGUAUUAAUAGGUGGCGCGGUAAAA---AUCAUCAAGUCUAAUUUGCUGCGCUUAAUGUGUGCGACCAAUUAGCAUAAAAAGGCAAGUUUAUCUAAGAAAAAU ..(((.((((((.((((((..(((...(((((((((((.---..............)))))))))))...))))))))).......((........)))))))).)))......... ( -26.96) >DroSec_CAF1 21686 114 + 1 CAAGGAAAAGUUUUCUUAUUAAUGGGAAGCGCGGUAAAA---AUCAUUAAAUCUAAUUUGCUGCGCUUAAUGUGUGCGCUCAAUUAGCAUAAAAAGGCAAGUUUAUCUAAGAAAAAU ..........((((((((........((((((((((((.---..............))))))))))))....(((((.........)))))................)))))))).. ( -24.66) >DroSim_CAF1 20997 113 + 1 CAAGGAAAACUUUUCUUAUUAAUAGGAAGCGCGGUAAAA---AUCAUUAAAUCUAAUUUGCUGCACUUAAUGUGUGCGCAAAAUUGGCAUAA-AAGGCAAGUUUAUCUAAGAAAAAU ..(((.((((((.((((....(((..(((.((((((((.---..............)))))))).)))..)))((((.((....))))))..-)))).)))))).)))......... ( -23.06) >DroEre_CAF1 25034 112 + 1 CAAGGAAAACUUUUCUAGUUAAUAGAAAGCGCGGUAGAA---AUUAUUAACUCUAAUUCGCUGCGCUUAAAGAGUGCUCCCAAUUAGCA-AC-AAGGCAAGUUUGUCUAACAAAAAG ...(((..(((((((((.....))))(((((((((.(((---.(((.......)))))))))))))))..)))))..))).........-..-.(((((....)))))......... ( -25.30) >DroYak_CAF1 23640 116 + 1 CAAGGAAAACUUUUCUAAUUCAUAGAAAGCGCGGUAGAAAAAAAUAUUUACAUUGAUUCGCUGCGCUUACAGAGUGCUUCGAAUUGGCAUAA-AAGGCAAGUUUAUCUAACAAAAAG ..(((.((((((.(((........(.(((((((((.(((...(((......)))..)))))))))))).)...(((((.......)))))..-.))).)))))).)))......... ( -25.80) >DroAna_CAF1 15903 91 + 1 CAAUAAGA-UCCAUUUAAUUAAUAGAAAGCGCGGCGGAAAAACCAAUUC---CCGACUCACAGGGACAACAAAGUGAUUC----------------------UUAGGCCAGAAAAAC ...(((((-..(((((...................((.....))...((---((........)))).....)))))..))----------------------)))............ ( -14.10) >consensus CAAGGAAAACUUUUCUAAUUAAUAGAAAGCGCGGUAAAA___AUCAUUAAAUCUAAUUCGCUGCGCUUAAAGAGUGCGCCCAAUUAGCAUAA_AAGGCAAGUUUAUCUAAGAAAAAU ..(((.((((((.((...........((((((((((((..................)))))))))))).....((((.........)))).....)).)))))).)))......... (-10.51 = -13.50 + 2.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:24 2006